Detailed information NTG0507437

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BTD91_RS09075
• Genome accession: NZ_CP065150
• Coordinates: 2011536..2012405 (-)
• Length: 289 a.a.
• NCBI ID: WP_077680844.1
• Uniprot ID: -
• Organism: Vibrio kanaloae strain R17
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2006536..2017405

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTD91_RS09040 (BTD91_09040)	rpsP	2007624..2007872 (+)	249	WP_004735508.1	30S ribosomal protein S16	-
BTD91_RS09045 (BTD91_09045)	rimM	2007897..2008451 (+)	555	WP_017056602.1	ribosome maturation factor RimM	-
BTD91_RS09050 (BTD91_09050)	trmD	2008478..2009218 (+)	741	WP_077680847.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BTD91_RS09055 (BTD91_09055)	rplS	2009278..2009631 (+)	354	WP_017056604.1	50S ribosomal protein L19	-
BTD91_RS09060 (BTD91_09060)	yacG	2009874..2010071 (-)	198	WP_077680846.1	DNA gyrase inhibitor YacG	-
BTD91_RS09065 (BTD91_09065)	zapD	2010152..2010892 (-)	741	WP_029627015.1	cell division protein ZapD	-
BTD91_RS09070 (BTD91_09070)	coaE	2010919..2011533 (-)	615	WP_077680845.1	dephospho-CoA kinase	-
BTD91_RS09075 (BTD91_09075)	pilD	2011536..2012405 (-)	870	WP_077680844.1	prepilin peptidase	Machinery gene
BTD91_RS09080 (BTD91_09080)	pilC	2012473..2013702 (-)	1230	WP_077680843.1	type II secretion system F family protein	Machinery gene
BTD91_RS09085 (BTD91_09085)	pilB	2013718..2015403 (-)	1686	WP_077680842.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BTD91_RS09090 (BTD91_09090)	-	2015407..2015859 (-)	453	WP_077680841.1	pilin	-
BTD91_RS09095 (BTD91_09095)	nadC	2016116..2017006 (-)	891	WP_077680840.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32614.65 Da
• Isoelectric Point: 5.9782

>NTDB_id=507437 BTD91_RS09075 WP_077680844.1 2011536..2012405(-) (pilD) [Vibrio kanaloae strain R17]
MEVLHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGEFNLSTPRSTCPKCDNQLRVI
DNIPVLSWLFLKGKCHSCSNPISARYPLVELLTATLCTVVASHFGFSFYAIALIFFTFVLITATFIDLDTMLLPDQITLP
LIWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
IFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMDWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=507437 BTD91_RS09075 WP_077680844.1 2011536..2012405(-) (pilD) [Vibrio kanaloae strain R17]
ATGGAAGTACTTCACTACTATCCTTGGCTATTCCCTGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTTCTCAA
CGTTGTAATTCATCGATTACCGATTATGATGGAACGTGAGTGGCAACAAGAGTGCTCCGAATATTTCTCTCAATATAAAA
TTCCAGCACCTGAAGGGGAATTTAATCTTAGCACTCCACGTTCAACTTGCCCGAAATGTGACAACCAATTAAGAGTCATT
GACAATATCCCCGTTTTGAGCTGGTTGTTCTTAAAGGGCAAGTGCCACAGTTGTTCGAATCCAATCAGTGCTCGCTACCC
TTTGGTAGAATTGCTTACTGCAACACTTTGTACCGTGGTGGCGAGTCACTTTGGTTTTAGTTTCTACGCTATTGCGCTGA
TTTTTTTCACCTTCGTATTGATTACAGCGACCTTTATTGATCTCGACACCATGCTGCTCCCTGATCAAATCACCTTACCG
TTAATTTGGTCTGGGATCGCGTTAGCACTTTTTAATATCAGCCCAGTATCGCTTCAAGACTCAGTAGTTGGTGCGATGGC
TGGTTACTTAGCCTTATGGTCTGTCTATTGGCTTTTCAAACTACTCACGGGTAAAGAAGGAATGGGCTATGGTGACTTTA
AATTATTAGCAGCACTTGGGGCATGGCTTGGGTGGCAGCACCTACCAATGATCATTCTTTTATCATCACTCGTTGGCCTT
ATTTTTGGATTGATTCAACTGAGGTTAAAACAACAAGGGATAGATAAAGCTTTCCCATTTGGACCTTACCTCGCCATTGC
TGGTTGGGTAAGCTTGATGTGGGGTAACGACATCATGGATTGGTATTTCACGTCTGTATTAGGAATTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.702	100	0.737
pilD	Vibrio cholerae strain A1552	69.444	99.654	0.692
pilD	Acinetobacter baumannii D1279779	51.685	92.388	0.478
pilD	Acinetobacter nosocomialis M2	51.685	92.388	0.478
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443