Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IV454_RS14125 Genome accession   NZ_CP065053
Coordinates   3120909..3122135 (-) Length   408 a.a.
NCBI ID   WP_206091953.1    Uniprot ID   -
Organism   Massilia antarctica strain P8398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3115909..3127135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IV454_RS14100 (IV454_14090) - 3116900..3118039 (-) 1140 WP_206091950.1 sensor histidine kinase KdpD -
  IV454_RS14105 (IV454_14095) yacG 3118140..3118325 (-) 186 WP_126074530.1 DNA gyrase inhibitor YacG -
  IV454_RS14110 (IV454_14100) zapD 3118339..3119094 (-) 756 WP_054266479.1 cell division protein ZapD -
  IV454_RS14115 (IV454_14105) coaE 3119156..3119812 (-) 657 WP_206091951.1 dephospho-CoA kinase -
  IV454_RS14120 (IV454_14110) - 3119813..3120706 (-) 894 WP_206091952.1 A24 family peptidase -
  IV454_RS14125 (IV454_14115) pilC 3120909..3122135 (-) 1227 WP_206091953.1 type II secretion system F family protein Machinery gene
  IV454_RS14130 (IV454_14120) pilB 3122147..3123874 (-) 1728 WP_054266483.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IV454_RS14135 (IV454_14125) - 3124086..3125366 (-) 1281 WP_206091954.1 HlyC/CorC family transporter -
  IV454_RS14140 (IV454_14130) - 3125592..3126152 (-) 561 WP_054266485.1 ATP-dependent Clp protease proteolytic subunit -
  IV454_RS14145 (IV454_14135) uraH 3126220..3126573 (-) 354 WP_054266486.1 hydroxyisourate hydrolase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44287.21 Da        Isoelectric Point: 10.0526

>NTDB_id=506268 IV454_RS14125 WP_206091953.1 3120909..3122135(-) (pilC) [Massilia antarctica strain P8398]
MALAQSKNSAAVKESVYAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGVMVTKVKKKTYRSGKKITDKDISLFTRQLAT
MMKAGVPLLQSFDIVSKGHSNPSMAKLIQELRSDIETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYK
EKTLAIKAKIKSALMYPVSILAIAFIVTAVIMIWVVPAFKSVFTSFGANLPTPTVVVMDISDFFVSYWWAIFGGLFAGLY
FFFQAWQRSAKMQRFMDLTLLKAPIFGNVIRKAAIARWTRTLATMFAAGVPLVEALDSVGGAAGNALYLEATKRIQNEVS
TGTSLTAAMQNANVFPPIVTQMVAIGEESGALDSMLGKVAGFFEDEVDEAVATLASLMEPLIMVILGVLIGGLVVAMYLP
IFKLGAVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=506268 IV454_RS14125 WP_206091953.1 3120909..3122135(-) (pilC) [Massilia antarctica strain P8398]
ATGGCACTCGCTCAATCGAAAAACTCCGCCGCCGTCAAGGAGTCGGTCTACGCCTGGGAAGGCAAGGACAAGACCGGCAA
GACCGTGCGCGGCGAACTGCGCGCCGGCGGCGAGGCCGTGGTCAATGTGACCTTGCGGCGCCAGGGTGTCATGGTGACCA
AGGTAAAGAAAAAGACTTATCGCAGCGGCAAGAAGATCACGGACAAGGATATTTCCCTGTTCACCCGCCAGCTGGCCACG
ATGATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCAGCAAGGGCCACTCGAATCCATCGATGGCCAAGCT
GATCCAGGAACTGCGCTCGGACATCGAAACCGGTACCAGCCTGAACAATGCTTTCCGCAAGTATCCGCTCTACTTCGACC
CGCTGTTCTGTAATCTGGTCGGCGCCGGCGAACAGGCCGGTATTCTGGAAGACTTGCTCACGCGCCTGGCGATCTACAAG
GAAAAAACCCTGGCCATCAAGGCCAAGATCAAGTCGGCGCTGATGTATCCGGTATCGATCCTGGCCATCGCCTTCATCGT
CACCGCCGTGATCATGATCTGGGTGGTACCGGCATTTAAATCGGTGTTTACCAGCTTCGGCGCCAACTTGCCGACCCCGA
CCGTGGTCGTGATGGACATTTCCGACTTCTTCGTCTCGTACTGGTGGGCGATTTTCGGCGGCCTGTTCGCCGGCCTGTAC
TTCTTCTTCCAGGCCTGGCAGCGTTCGGCCAAGATGCAGCGCTTCATGGACCTGACCTTGCTCAAGGCGCCGATTTTCGG
CAACGTCATCCGCAAGGCGGCGATCGCGCGCTGGACCCGGACCCTGGCCACCATGTTCGCGGCCGGCGTGCCGCTGGTCG
AAGCGCTCGACTCGGTCGGCGGCGCGGCCGGCAATGCCCTGTACCTGGAAGCGACCAAGCGCATCCAGAACGAGGTGAGC
ACCGGCACCAGCCTGACCGCGGCGATGCAGAACGCCAATGTGTTCCCGCCGATTGTCACCCAGATGGTCGCCATCGGCGA
AGAGTCCGGTGCGCTCGATTCGATGCTGGGCAAGGTGGCCGGCTTCTTTGAAGATGAAGTCGACGAAGCCGTCGCTACCC
TGGCGTCGCTGATGGAACCGCTGATCATGGTGATTTTGGGCGTGCTCATCGGCGGTCTGGTGGTCGCCATGTACCTGCCG
ATCTTCAAACTGGGCGCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.12

98.284

0.512
  pilG Neisseria gonorrhoeae MS11

52.381

97.794

0.512
  pilG Neisseria meningitidis 44/76-A

51.88

97.794

0.507
  pilC Legionella pneumophila strain ERS1305867

51.515

97.059

0.5
  pilC Acinetobacter baumannii D1279779

51.385

97.304

0.5
  pilC Acinetobacter baylyi ADP1

50.251

97.549

0.49
  pilC Vibrio cholerae strain A1552

39.206

98.775

0.387
  pilC Vibrio campbellii strain DS40M4

39.447

97.549

0.385
  pilC Thermus thermophilus HB27

37.343

97.794

0.365