Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IPQ37_RS01970 Genome accession   NZ_CP065041
Coordinates   396715..397941 (-) Length   408 a.a.
NCBI ID   WP_005297600.1    Uniprot ID   A0A2T3QMI6
Organism   Photobacterium damselae subsp. damselae strain AS-16-0963-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391715..402941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPQ37_RS01945 (IPQ37_01945) mutT 393426..393833 (-) 408 WP_237042615.1 8-oxo-dGTP diphosphatase MutT -
  IPQ37_RS01950 (IPQ37_01950) yacG 394027..394236 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  IPQ37_RS01955 (IPQ37_01955) zapD 394245..394982 (-) 738 WP_005297594.1 cell division protein ZapD -
  IPQ37_RS01960 (IPQ37_01960) coaE 395050..395652 (-) 603 WP_109374725.1 dephospho-CoA kinase -
  IPQ37_RS01965 (IPQ37_01965) pilD 395654..396532 (-) 879 WP_005297598.1 prepilin peptidase Machinery gene
  IPQ37_RS01970 (IPQ37_01970) pilC 396715..397941 (-) 1227 WP_005297600.1 type II secretion system F family protein Machinery gene
  IPQ37_RS01975 (IPQ37_01975) pilB 398007..399698 (-) 1692 WP_237042616.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IPQ37_RS01980 (IPQ37_01980) pilA 399699..400085 (-) 387 WP_237042617.1 pilin Machinery gene
  IPQ37_RS01985 (IPQ37_01985) ampD 400471..401049 (+) 579 WP_069531889.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IPQ37_RS01990 (IPQ37_01990) pdhR 401409..402182 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45042.17 Da        Isoelectric Point: 10.0330

>NTDB_id=506132 IPQ37_RS01970 WP_005297600.1 396715..397941(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLTLVL
YRYSYKRSYSFRLRIARLSLRLPIIGNVILKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=506132 IPQ37_RS01970 WP_005297600.1 396715..397941(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCCTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCCATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATAGTGCAGGCTCTGAAGCTAATGGCCAGTAGCCATCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGTGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCTGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTACTCTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATTGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCATACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCAACCACTTTTAGTGCCGGTATTCCCCTACTAACAG
GGCTACAGTCGGCTGGAAAAACCGCAGGCAACTTACATATTGAAGAGGCCATTATGGAAGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCTGGCTCTCTTGATGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3QMI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.25

98.039

0.542
  pilG Neisseria meningitidis 44/76-A

41.481

99.265

0.412
  pilG Neisseria gonorrhoeae MS11

41.481

99.265

0.412
  pilC Acinetobacter baumannii D1279779

39.951

100

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

39.295

97.304

0.382
  pilC Legionella pneumophila strain ERS1305867

38.442

97.549

0.375