Detailed information NTG0506131

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IPQ37_RS01965
• Genome accession: NZ_CP065041
• Coordinates: 395654..396532 (-)
• Length: 292 a.a.
• NCBI ID: WP_005297598.1
• Uniprot ID: A0A2T3QML2
• Organism: Photobacterium damselae subsp. damselae strain AS-16-0963-3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 390654..401532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IPQ37_RS01945 (IPQ37_01945)	mutT	393426..393833 (-)	408	WP_237042615.1	8-oxo-dGTP diphosphatase MutT	-
IPQ37_RS01950 (IPQ37_01950)	yacG	394027..394236 (-)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
IPQ37_RS01955 (IPQ37_01955)	zapD	394245..394982 (-)	738	WP_005297594.1	cell division protein ZapD	-
IPQ37_RS01960 (IPQ37_01960)	coaE	395050..395652 (-)	603	WP_109374725.1	dephospho-CoA kinase	-
IPQ37_RS01965 (IPQ37_01965)	pilD	395654..396532 (-)	879	WP_005297598.1	prepilin peptidase	Machinery gene
IPQ37_RS01970 (IPQ37_01970)	pilC	396715..397941 (-)	1227	WP_005297600.1	type II secretion system F family protein	Machinery gene
IPQ37_RS01975 (IPQ37_01975)	pilB	398007..399698 (-)	1692	WP_237042616.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IPQ37_RS01980 (IPQ37_01980)	pilA	399699..400085 (-)	387	WP_237042617.1	pilin	Machinery gene
IPQ37_RS01985 (IPQ37_01985)	ampD	400471..401049 (+)	579	WP_069531889.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32501.00 Da
• Isoelectric Point: 8.2918

>NTDB_id=506131 IPQ37_RS01965 WP_005297598.1 395654..396532(-) (pilD) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLALKGKCKSCHAPISRRYPMIELLTAALCGTVAILFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=506131 IPQ37_RS01965 WP_005297598.1 395654..396532(-) (pilD) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATCGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGCTAAATACCGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATTCCTGTTATTAGTTGGCTGGCATTAAAGGGGAAGTGCAAATCTTGTCACGCGCCGATTAGCCG
ACGTTACCCGATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCGCCAACTTGGTGGGCGG
TTGCAGTAATCTTTTTCACTTTCGCCTTAATTGCTCTGACTTTTATCGATATTGATAAGATGCTACTGCCCGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCGCTACAAGATTCTGTGATTGG
TGCAATTGCAGGCTATCTCTGTTTGTGGAGCGTCTTTTGGATCTTTAAATTATTAACCAAAAAAGACGGTATGGGTTATG
GCGACTTTAAACTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTACCTGTTGTGGTTCTGCTATCCTCTCTT
GCCGGTGCAATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCAGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

3D structure

• AlphaFold DB: A0A2T3QML2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.753	100	0.658
pilD	Vibrio cholerae strain A1552	62.799	100	0.63
pilD	Acinetobacter baumannii D1279779	51.673	92.123	0.476
pilD	Acinetobacter nosocomialis M2	51.673	92.123	0.476
pilD	Neisseria gonorrhoeae MS11	47.842	95.205	0.455