Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IWH25_RS03240 Genome accession   NZ_CP064781
Coordinates   686198..687286 (-) Length   362 a.a.
NCBI ID   WP_203387925.1    Uniprot ID   A0A974SQ06
Organism   Azospira restricta strain DSM 18626     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 681198..692286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IWH25_RS03220 (IWH25_03220) - 681463..682377 (+) 915 WP_203387921.1 hydrogen peroxide-inducible genes activator -
  IWH25_RS03225 (IWH25_03225) - 682483..682959 (+) 477 WP_203387922.1 Dps family protein -
  IWH25_RS03230 (IWH25_03230) - 683031..685637 (-) 2607 WP_203387923.1 DNA topoisomerase III -
  IWH25_RS03235 (IWH25_03235) - 685737..686186 (-) 450 WP_203387924.1 DUF494 family protein -
  IWH25_RS03240 (IWH25_03240) dprA 686198..687286 (-) 1089 WP_203387925.1 DNA-processing protein DprA Machinery gene
  IWH25_RS03245 (IWH25_03245) - 687311..688342 (-) 1032 WP_203387926.1 LysM peptidoglycan-binding domain-containing protein -
  IWH25_RS03250 (IWH25_03250) def 688504..689007 (+) 504 WP_203387927.1 peptide deformylase -
  IWH25_RS03255 (IWH25_03255) fmt 689019..689942 (+) 924 WP_203387928.1 methionyl-tRNA formyltransferase -
  IWH25_RS03260 (IWH25_03260) - 690130..691077 (-) 948 WP_203387929.1 S1/P1 nuclease -
  IWH25_RS03265 (IWH25_03265) - 691086..692009 (-) 924 WP_203387930.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 36879.01 Da        Isoelectric Point: 5.0494

>NTDB_id=504696 IWH25_RS03240 WP_203387925.1 686198..687286(-) (dprA) [Azospira restricta strain DSM 18626]
MRADADWLRLTLIPGIGGETQRKLLAAFGLPENIFAAGEAALAGVVGAKTARLLADTDNGAAVDAALAWGAQPGQRILTL
ADADYPQTLLDIPDPPTLLYVRGDVGLLNRPALAVVGSRNATPQGEGNARAFAGALAEAGFVIVSGLALGIDAAAHRGAL
AAGGATVAVIGTGADRLYPARNQALALEIADRGAIVSEFPLGTPAAAANFPRRNRLISGLARGVLVVEAAVESGSLITAR
LAGEQGREVFAIPGSIHAPQARGCHRLIRQGAKLVESVADVLDELGGGARPQTLPDAPATRPAGSDAAGRLLDQAGFDPI
TIDELVGRSGLTADALSVILLQLELDGRVASLPGGRYQRLAE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=504696 IWH25_RS03240 WP_203387925.1 686198..687286(-) (dprA) [Azospira restricta strain DSM 18626]
ATGCGCGCCGACGCCGACTGGCTGCGCCTGACGCTGATCCCGGGCATCGGCGGCGAAACCCAGCGCAAGCTGCTCGCCGC
CTTCGGCCTGCCGGAAAACATCTTCGCCGCCGGCGAGGCGGCACTGGCCGGCGTGGTCGGCGCCAAGACCGCTCGCCTGC
TGGCTGACACCGACAACGGCGCCGCGGTCGACGCGGCGCTGGCCTGGGGTGCCCAGCCCGGGCAGCGCATCCTGACGCTG
GCCGACGCCGACTATCCGCAAACCCTGCTCGACATTCCCGATCCGCCGACGCTGCTCTACGTGCGCGGCGACGTCGGCCT
GCTCAACCGGCCCGCGCTCGCCGTCGTCGGCAGCCGCAACGCGACGCCGCAAGGGGAGGGCAACGCCCGCGCCTTCGCCG
GCGCACTGGCGGAGGCCGGCTTCGTCATCGTCAGCGGCCTCGCGCTCGGTATCGATGCCGCCGCGCACCGTGGCGCGCTG
GCCGCCGGCGGCGCCACCGTCGCCGTCATCGGCACCGGCGCCGACCGCCTCTACCCGGCCCGCAACCAGGCGCTGGCGCT
GGAAATCGCCGACCGCGGCGCGATCGTCTCCGAGTTCCCGCTCGGCACGCCGGCCGCGGCGGCCAATTTTCCGCGCCGCA
ACCGCCTGATCTCCGGCCTCGCGCGCGGCGTGCTGGTGGTCGAGGCGGCGGTCGAGAGCGGCTCGCTGATCACCGCCCGG
CTGGCCGGCGAGCAGGGCCGGGAAGTCTTCGCGATCCCCGGCTCGATCCATGCGCCGCAGGCGCGCGGCTGCCACCGCCT
GATCCGGCAGGGCGCGAAGCTGGTCGAATCGGTCGCCGACGTCCTCGACGAACTCGGCGGCGGCGCACGCCCGCAAACCC
TGCCCGACGCCCCGGCGACGCGCCCGGCCGGCAGCGACGCCGCCGGCCGCCTGCTCGACCAGGCCGGCTTCGACCCGATC
ACGATCGACGAGCTGGTCGGCCGCTCCGGCTTGACGGCCGATGCGCTTTCCGTGATCCTGTTGCAGCTGGAGCTCGACGG
TCGGGTCGCCAGCCTGCCGGGAGGCCGCTATCAGCGGTTGGCGGAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-276)

DprA winged helix domain (DprA_WH)

(296-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

46.494

100

0.494
  dprA Neisseria gonorrhoeae MS11

46.494

100

0.494
  dprA Neisseria meningitidis MC58

45.758

100

0.492
  dprA Neisseria meningitidis strain C311

45.758

100

0.492
  dprA Vibrio campbellii strain DS40M4

44.11

100

0.445
  dprA Vibrio cholerae strain A1552

41.803

100

0.423
  dprA Legionella pneumophila strain ERS1305867

49.671

83.978

0.417
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.118

100

0.392
  dprA Glaesserella parasuis strain SC1401

42.903

85.635

0.367
  dprA Haemophilus influenzae Rd KW20

39.759

91.713

0.365
  dprA Acinetobacter baylyi ADP1

43.813

82.597

0.362