Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KRG72_RS03800 Genome accession   NZ_CP076703
Coordinates   743658..745445 (+) Length   595 a.a.
NCBI ID   WP_258255940.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 738658..750445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS03780 (KRG72_03780) - 739234..739905 (-) 672 WP_074482065.1 Crp/Fnr family transcriptional regulator -
  KRG72_RS03785 (KRG72_03785) - 739985..740851 (-) 867 WP_093815441.1 LysR family transcriptional regulator -
  KRG72_RS03790 (KRG72_03790) - 740960..741985 (+) 1026 WP_258255938.1 YeiH family protein -
  KRG72_RS03795 (KRG72_03795) - 742162..743538 (+) 1377 WP_258255939.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  KRG72_RS03800 (KRG72_03800) uvrC 743658..745445 (+) 1788 WP_258255940.1 excinuclease ABC subunit UvrC Machinery gene
  KRG72_RS03805 (KRG72_03805) - 745543..747255 (+) 1713 WP_258255941.1 hypothetical protein -
  KRG72_RS03810 (KRG72_03810) - 747403..748005 (+) 603 WP_074625879.1 nitroreductase family protein -
  KRG72_RS03815 (KRG72_03815) pepV 748168..749574 (+) 1407 WP_258255942.1 dipeptidase PepV -
  KRG72_RS03820 (KRG72_03820) - 749645..750229 (+) 585 WP_014334564.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 68691.41 Da        Isoelectric Point: 9.2920

>NTDB_id=504056 KRG72_RS03800 WP_258255940.1 743658..745445(+) (uvrC) [Streptococcus equinus strain S1]
MNELIKHKLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTGSNTEALLLEIN
LIQENMPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMYFGPYPDSGAATEIKRLLDRIFPFKKCTNPANKVC
FYYHLGQCKAHTICHVDHDYFVEMAQDVKNFLDGKDNKIVDGLKDKMQKASDMMEFERAAEYRDLLQAISTLRTKQRVMN
QDMMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEPEEDFLTYVGQFYRDSKHFIPKEIFIPQDIDEDLVKA
VVDTKVIKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKDIRKTHGAIENIGELLNIPKPVRIEAFDNSNIQGTSPVAGMV
VFVNGKPSKKDYRKFKIKTVVGPDDYASMREVIYRRYSRVMKDGLTPPDLIIIDGGQGQVNVARDVIENKLGLDIPIAGL
QKNDKHQTHELLFGDPLEVVELPRNSEEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKS
LPNIQKADVEDIINCGIPRNVAVAVKEKLAEEKKG

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=504056 KRG72_RS03800 WP_258255940.1 743658..745445(+) (uvrC) [Streptococcus equinus strain S1]
ATGAATGAACTGATTAAACATAAATTGGAATTGCTGCCAGATAGCCCTGGTTGTTATATCCATAAAGATAAAAACGGCAA
GATTATCTATGTCGGAAAAGCCAAAAATCTCAAGAATCGTGTGCGCAGCTATTTTCATGGTAGCCACAATACCAAGACTG
AACTCTTGGTTTCTGAAATTGAAGATTTTGAATACATCGTCACAGGGTCAAATACCGAAGCTTTACTTCTTGAAATCAAT
CTGATTCAAGAAAACATGCCAAAGTATAACATCAAGCTAAAAGATGACAAATCTTACCCATTTATCAAAATTACTGTGAA
TGAACAGTACCCACGTTTGATGATCACCCGTCAAATCAAAAAAGATGGTGCCATGTATTTTGGACCATACCCAGATTCTG
GTGCTGCGACAGAAATTAAACGACTTTTGGACCGCATTTTTCCTTTTAAAAAATGTACCAATCCAGCTAATAAAGTTTGC
TTTTATTACCATTTAGGTCAATGTAAAGCCCATACTATCTGTCATGTGGACCATGATTATTTTGTTGAAATGGCGCAAGA
CGTCAAGAATTTTCTTGATGGCAAAGACAATAAAATCGTCGATGGCTTGAAAGACAAAATGCAAAAAGCGTCAGACATGA
TGGAATTTGAACGTGCGGCAGAATACCGTGATTTATTGCAAGCTATCTCAACACTTCGTACCAAACAACGTGTCATGAAC
CAAGATATGATGGACCGTGATATTTTTGGTTATTATGTCGACAAAGGTTGGATGTGTGTTCAGGTATTCTTTGTTCGCCA
AGGAAAACTCATCCAACGTGATGTCAATATGTTCCCGTATTACAATGAACCAGAAGAGGATTTCTTAACTTACGTCGGAC
AATTTTACCGCGACAGCAAGCATTTTATTCCAAAAGAAATCTTTATTCCTCAGGATATTGATGAAGATTTGGTTAAAGCA
GTGGTAGATACTAAGGTCATTAAACCGCAACGCGGTGAGAAGAAACAGCTGGTCAATCTAGCCATAAAAAATGCGCGTGT
CAGCCTGCAACAAAAATTCGATTTGCTAGAAAAAGATATCCGCAAAACACATGGCGCTATTGAAAATATCGGTGAATTGC
TCAATATTCCAAAACCCGTGCGCATTGAGGCTTTTGATAACTCAAATATTCAAGGAACAAGCCCAGTTGCTGGGATGGTT
GTTTTTGTAAATGGCAAGCCTAGCAAGAAAGATTACCGCAAATTTAAGATTAAAACCGTTGTTGGGCCAGATGATTACGC
CAGCATGCGTGAAGTTATTTATCGTAGATACAGTCGCGTGATGAAAGATGGATTGACACCACCAGATTTGATTATCATCG
ATGGTGGTCAAGGTCAGGTCAATGTGGCGCGTGATGTCATTGAAAATAAACTTGGTCTTGATATTCCAATCGCTGGTTTG
CAAAAAAATGACAAACACCAAACGCACGAATTGCTCTTTGGAGATCCTTTAGAAGTGGTCGAATTGCCACGAAATTCTGA
GGAATTCTTCTTGCTTCAACGTATCCAAGATGAGGTTCACCGTTTTGCCATTACCTTCCACCGTCAACTACGTTCCAAAA
ATTCATTCTCATCAAAACTGGACGGCATTGCTGGGCTTGGTCCAAAGCGCAAGCAATTACTCATGAAACACTTTAAGAGC
TTGCCAAATATTCAAAAAGCAGACGTGGAAGATATTATCAATTGTGGCATTCCACGAAATGTCGCCGTAGCTGTTAAAGA
AAAACTAGCTGAGGAGAAGAAAGGGTAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-524)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(199-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

78.778

98.992

0.78
  uvrC Streptococcus pneumoniae R6

78.608

98.992

0.778
  uvrC Streptococcus pneumoniae D39

78.608

98.992

0.778