NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	IVG45_RS19475	Genome accession	NZ_CP064653
Coordinates	4157956..4158819 (+)	Length	287 a.a.
NCBI ID	WP_196435423.1	Uniprot ID	A0A7T0JM66
Organism	Methylomonas sp. LL1
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4152956..4163819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IVG45_RS19460 (IVG45_19415)	-	4154026..4154817 (+)	792	WP_230874662.1	response regulator	-
IVG45_RS19465 (IVG45_19420)	pilB	4154947..4156656 (+)	1710	WP_196435421.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IVG45_RS19470 (IVG45_19425)	pilC	4156660..4157877 (+)	1218	WP_196435422.1	type II secretion system F family protein	Machinery gene
IVG45_RS19475 (IVG45_19430)	pilD	4157956..4158819 (+)	864	WP_196435423.1	A24 family peptidase	Machinery gene
IVG45_RS19480 (IVG45_19435)	coaE	4158823..4159434 (+)	612	WP_196435424.1	dephospho-CoA kinase	-
IVG45_RS19485 (IVG45_19440)	zapD	4159431..4160201 (+)	771	WP_196435425.1	cell division protein ZapD	-
IVG45_RS19490 (IVG45_19445)	yacG	4160201..4160404 (+)	204	WP_196435426.1	DNA gyrase inhibitor YacG	-
IVG45_RS19495 (IVG45_19450)	-	4160419..4161351 (-)	933	WP_196435427.1	Nudix family hydrolase	-
IVG45_RS19500 (IVG45_19455)	argJ	4161352..4162566 (-)	1215	WP_196435428.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
IVG45_RS19505 (IVG45_19460)	-	4162588..4162863 (-)	276	WP_230874663.1	sulfurtransferase TusA family protein	-

Sequence

Protein

Download Length: 287 a.a. Molecular weight: 31925.33 Da Isoelectric Point: 7.9582

                                >NTDB_id=504057 IVG45_RS19475 WP_196435423.1 4157956..4158819(+) (pilD) [Methylomonas sp. LL1]

MQDLLRNLPVLLVILTFILGLMVGSFLNVVIYRLPVMMQRGWRRECLEFLQLPAEQSLETFNLLWPGSRCPVCKTDIKAY

QNIPVLSYLLLGGKCGHCATPISPRYPLIEIFSGICSALMAWHFGYSLAMLGALLLTWGLIALSFIDIDQQLLPDSITLP

MLWMGLFLSLFSLYTDSQASIIGAVAGYLSLWSVYHLFKLLTGKEGMGHGDFKLLAMLGAWLGWQYLPLIILLSSLVGAV

IGIAMILFKRHDASRPIPFGPYLAAAGWLALIWGGEINRLYLNMVGL

Nucleotide

Download Length: 864 bp

                                >NTDB_id=504057 IVG45_RS19475 WP_196435423.1 4157956..4158819(+) (pilD) [Methylomonas sp. LL1]

ATGCAAGATTTACTCCGAAATCTACCTGTGCTTCTCGTTATCCTTACCTTTATCCTTGGCTTGATGGTAGGCAGCTTTTT

GAATGTGGTGATCTACCGCTTGCCGGTAATGATGCAAAGAGGTTGGCGGCGGGAATGCCTTGAGTTTCTGCAATTACCAG

CGGAACAATCGCTAGAAACATTCAACTTGTTATGGCCGGGGTCGCGTTGTCCCGTTTGTAAAACAGACATCAAAGCCTAT

CAAAACATTCCGGTGCTGAGTTATCTGTTGCTGGGCGGCAAATGCGGGCATTGCGCGACGCCTATTTCCCCGCGTTATCC

CTTGATTGAAATTTTTTCCGGTATTTGTTCGGCTCTGATGGCCTGGCATTTCGGTTACAGCTTGGCTATGTTGGGTGCCT

TATTGCTGACCTGGGGCCTAATTGCATTGAGTTTCATCGATATCGATCAGCAATTGCTGCCCGATTCCATCACCTTGCCT

ATGCTATGGATGGGGTTGTTTTTAAGCCTGTTTTCGCTGTATACCGATAGCCAAGCCAGCATTATCGGCGCGGTTGCCGG

CTATTTAAGCTTGTGGAGCGTTTATCATTTGTTCAAGCTGTTGACCGGCAAGGAAGGCATGGGCCATGGCGACTTCAAAT

TGCTGGCGATGTTGGGCGCCTGGCTGGGTTGGCAGTATTTGCCGCTGATTATTCTATTGTCGTCGCTGGTGGGGGCGGTG

ATAGGTATTGCGATGATATTATTTAAGCGGCATGATGCCAGTCGTCCGATCCCATTTGGCCCCTATCTGGCTGCAGCCGG

TTGGCTGGCTTTGATTTGGGGGGGCGAGATCAATCGTCTATATCTGAATATGGTCGGGCTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-243)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-124)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7T0JM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	53.684	99.303	0.533
pilD	Vibrio cholerae strain A1552	52.265	100	0.523
pilD	Acinetobacter baumannii D1279779	51.903	100	0.523
pilD	Acinetobacter nosocomialis M2	51.557	100	0.519
pilD	Neisseria gonorrhoeae MS11	53.876	89.895	0.484

Detailed information NTG0504057