Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IUJ52_RS10725 Genome accession   NZ_CP064379
Coordinates   2278614..2279840 (-) Length   408 a.a.
NCBI ID   WP_004729085.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2273614..2284840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS10700 (IUJ52_10695) parC 2273675..2275948 (+) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -
  IUJ52_RS10705 (IUJ52_10700) yacG 2276054..2276251 (-) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  IUJ52_RS10710 (IUJ52_10705) zapD 2276309..2277049 (-) 741 WP_004729090.1 cell division protein ZapD -
  IUJ52_RS10715 (IUJ52_10710) coaE 2277082..2277690 (-) 609 WP_004729089.1 dephospho-CoA kinase -
  IUJ52_RS10720 (IUJ52_10715) pilD 2277693..2278562 (-) 870 WP_004729087.1 A24 family peptidase Machinery gene
  IUJ52_RS10725 (IUJ52_10720) pilC 2278614..2279840 (-) 1227 WP_004729085.1 type II secretion system F family protein Machinery gene
  IUJ52_RS10730 (IUJ52_10725) pilB 2279919..2281607 (-) 1689 WP_004729083.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IUJ52_RS10735 (IUJ52_10730) - 2281613..2282062 (-) 450 WP_004729081.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  IUJ52_RS10740 (IUJ52_10735) nadC 2282309..2283196 (-) 888 WP_004729079.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IUJ52_RS10745 (IUJ52_10740) ampD 2283345..2283899 (+) 555 WP_004729077.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IUJ52_RS10750 (IUJ52_10745) fldB 2283935..2284456 (-) 522 WP_004729075.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.05 Da        Isoelectric Point: 10.5674

>NTDB_id=501453 IUJ52_RS10725 WP_004729085.1 2278614..2279840(-) (pilC) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVVGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=501453 IUJ52_RS10725 WP_004729085.1 2278614..2279840(-) (pilC) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGGCGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATCGAAGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAAGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGTGTCAAGACTCGCGACATCACCCTGCTTACACGCCAGCTTTCCACCATG
CTGACTACAGGTGTACCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCACCGCAAAGCAGAAATGAAATCAATTCT
GGCTCAAGTCACCAAAGGGGTAGAAGCTGGCACCCCAATGTCCAAAGCGATGCGCACCGCCAGCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAGCAATCCGGGAATTTGGCCGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTACGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCGATGGTGATGTTGGTCGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTTCCTTGGTTTACCC
AGCAAATTCTTAAACTCTCCCACGGCGTGCAAGCCTACAGCCTATGGGGCGTACTAGCGACCAGCGCTGGCCTTTTGGCT
CTCAAAACCGCGCGCAACAAATCATTGGTCTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGTTTTCCTGTTGTCGGCGC
GGTCTTAGCCAAGGCAGCCATTGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCGATTCTGGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAGGAGGTGCATCGCCATACCGCGGCA
GGCATGCCGATGTATATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTAATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GGAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.559

100

0.846
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Pseudomonas stutzeri DSM 10701

42.716

99.265

0.424
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria gonorrhoeae MS11

38.916

99.51

0.387
  pilG Neisseria meningitidis 44/76-A

38.67

99.51

0.385