Detailed information NTG0501452

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IUJ52_RS10720
• Genome accession: NZ_CP064379
• Coordinates: 2277693..2278562 (-)
• Length: 289 a.a.
• NCBI ID: WP_004729087.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain PartQ-Vfurnissii-RM8376
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2272693..2283562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ52_RS10700 (IUJ52_10695)	parC	2273675..2275948 (+)	2274	WP_004729093.1	DNA topoisomerase IV subunit A	-
IUJ52_RS10705 (IUJ52_10700)	yacG	2276054..2276251 (-)	198	WP_004729092.1	DNA gyrase inhibitor YacG	-
IUJ52_RS10710 (IUJ52_10705)	zapD	2276309..2277049 (-)	741	WP_004729090.1	cell division protein ZapD	-
IUJ52_RS10715 (IUJ52_10710)	coaE	2277082..2277690 (-)	609	WP_004729089.1	dephospho-CoA kinase	-
IUJ52_RS10720 (IUJ52_10715)	pilD	2277693..2278562 (-)	870	WP_004729087.1	A24 family peptidase	Machinery gene
IUJ52_RS10725 (IUJ52_10720)	pilC	2278614..2279840 (-)	1227	WP_004729085.1	type II secretion system F family protein	Machinery gene
IUJ52_RS10730 (IUJ52_10725)	pilB	2279919..2281607 (-)	1689	WP_004729083.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IUJ52_RS10735 (IUJ52_10730)	-	2281613..2282062 (-)	450	WP_004729081.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
IUJ52_RS10740 (IUJ52_10735)	nadC	2282309..2283196 (-)	888	WP_004729079.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32204.28 Da
• Isoelectric Point: 6.9289

>NTDB_id=501452 IUJ52_RS10720 WP_004729087.1 2277693..2278562(-) (pilD) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MDIFTFYPWLFPTLATLLGLIIGSFLNVVIYRLPKIMEREWRQDCAESFPEYHIEPPQGVLTLSTPRSTCPHCDTPIRII
DNIPVLSWLLLRGKCSQCHAPISARYPLIESFTALCSLAIALQFGFSWFAVALLFFSYVLIAATFIDFDTMLLPDQLTLP
LMWGGIALALAGISPITLHDAVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSVVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSALYGQAIVGWYFHSVLGF

Nucleotide

• Length: 870 bp

>NTDB_id=501452 IUJ52_RS10720 WP_004729087.1 2277693..2278562(-) (pilD) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGGACATTTTTACTTTCTATCCCTGGCTGTTTCCCACGCTGGCCACCTTGCTGGGTCTGATCATCGGCAGTTTTCTCAA
TGTGGTGATCTATCGCTTGCCGAAAATCATGGAGCGCGAGTGGCGTCAAGACTGTGCCGAGTCCTTTCCGGAATACCACA
TTGAACCGCCCCAAGGTGTGTTAACACTCAGCACGCCCCGTTCCACCTGCCCACATTGCGATACACCGATTCGTATCATC
GACAATATTCCGGTGCTAAGCTGGCTGCTACTGCGCGGCAAGTGCTCGCAGTGCCACGCACCTATTAGCGCTCGCTACCC
ACTGATTGAATCGTTTACGGCGTTATGCAGCTTGGCGATTGCTTTGCAGTTTGGTTTTAGCTGGTTTGCGGTGGCTTTGC
TGTTTTTCAGTTATGTGCTGATTGCGGCAACCTTCATCGACTTCGACACCATGCTGCTGCCTGACCAACTGACGCTACCG
TTGATGTGGGGCGGTATCGCACTCGCGCTAGCGGGCATCAGCCCAATCACGTTGCACGATGCCGTGATCGGTGCGATGGC
GGGGTATCTAGCGCTGTGGTCCGTCTACTGGCTGTTTAAACTGCTCACGGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGTTGTTGGCCGCGCTGGGCGCTTGGCTCGGATGGCAGCAGCTGCCGATCATCATTTTGATGTCTTCGGTGGTCGGCCTC
GTGTTTGGTCTGATTCAACTGCGCCTGCAAAAACGCGGCATAGATAAAGCCTTCCCGTTTGGCCCTTATCTGGCGATTGC
GGGCTGGCTGTCAGCGCTATACGGTCAGGCGATCGTTGGTTGGTATTTTCATTCCGTATTAGGATTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	79.167	99.654	0.789
pilD	Vibrio campbellii strain DS40M4	77.083	99.654	0.768
pilD	Acinetobacter nosocomialis M2	52.574	94.118	0.495
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Neisseria gonorrhoeae MS11	47.584	93.08	0.443