Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   IUJ46_RS08930 Genome accession   NZ_CP064364
Coordinates   1733111..1734049 (+) Length   312 a.a.
NCBI ID   WP_010921798.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PartK-Spyogenes-RM8376     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1728111..1739049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ46_RS08920 (IUJ46_08875) rpoC 1728860..1732501 (+) 3642 WP_010921797.1 DNA-directed RNA polymerase subunit beta' -
  IUJ46_RS08925 (IUJ46_08880) - 1732653..1733018 (+) 366 WP_002986560.1 DUF1033 family protein -
  IUJ46_RS08930 (IUJ46_08885) comYA 1733111..1734049 (+) 939 WP_010921798.1 competence type IV pilus ATPase ComGA Machinery gene
  IUJ46_RS08935 (IUJ46_08890) comYB 1733985..1735019 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  IUJ46_RS08940 (IUJ46_08895) comYC 1735021..1735347 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  IUJ46_RS08945 (IUJ46_08900) comGD 1735322..1735750 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  IUJ46_RS08950 (IUJ46_08905) comGE 1735707..1735991 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  IUJ46_RS08955 (IUJ46_08910) comYF 1735984..1736418 (+) 435 WP_010921800.1 competence type IV pilus minor pilin ComGF Machinery gene
  IUJ46_RS08960 (IUJ46_08915) comGG 1736402..1736728 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  IUJ46_RS08965 (IUJ46_08920) comYH 1736826..1737779 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  IUJ46_RS08970 (IUJ46_08925) - 1737838..1739034 (+) 1197 WP_010921803.1 acetate kinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35068.31 Da        Isoelectric Point: 8.5825

>NTDB_id=501094 IUJ46_RS08930 WP_010921798.1 1733111..1734049(+) (comYA) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
MVQALAKAILAKAEQVHAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISNYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=501094 IUJ46_RS08930 WP_010921798.1 1733111..1734049(+) (comYA) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCATGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAATTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAAATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

61.736

99.679

0.615
  comYA Streptococcus mutans UA159

61.736

99.679

0.615
  comYA Streptococcus gordonii str. Challis substr. CH1

60.772

99.679

0.606
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.323

99.359

0.599
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae D39

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae R6

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

58.842

99.679

0.587
  comGA Lactococcus lactis subsp. cremoris KW2

50.482

99.679

0.503
  comGA Latilactobacillus sakei subsp. sakei 23K

39.655

92.949

0.369