Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IQ863_RS22950 Genome accession   NZ_CP064270
Coordinates   4442969..4444210 (+) Length   413 a.a.
NCBI ID   WP_279400968.1    Uniprot ID   -
Organism   Priestia megaterium strain N447-3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4437969..4449210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ863_RS22925 - 4439156..4439881 (+) 726 WP_243556055.1 SDR family oxidoreductase -
  IQ863_RS22930 - 4439947..4440207 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  IQ863_RS22935 - 4440421..4441212 (+) 792 WP_013058808.1 DUF3388 domain-containing protein -
  IQ863_RS22940 - 4441225..4442223 (+) 999 WP_243556056.1 helix-turn-helix domain-containing protein -
  IQ863_RS22945 pgsA 4442368..4442952 (+) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IQ863_RS22950 cinA 4442969..4444210 (+) 1242 WP_279400968.1 competence/damage-inducible protein A Machinery gene
  IQ863_RS22955 recA 4444412..4445449 (+) 1038 WP_013058804.1 recombinase RecA Machinery gene
  IQ863_RS22960 rny 4445730..4447289 (+) 1560 WP_013058803.1 ribonuclease Y -
  IQ863_RS22965 - 4447371..4448168 (+) 798 WP_042991933.1 TIGR00282 family metallophosphoesterase -
  IQ863_RS22970 spoVS 4448392..4448652 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44811.93 Da        Isoelectric Point: 4.9863

>NTDB_id=500481 IQ863_RS22950 WP_279400968.1 4442969..4444210(+) (cinA) [Priestia megaterium strain N447-3]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVDGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADTAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKGQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=500481 IQ863_RS22950 WP_279400968.1 4442969..4444210(+) (cinA) [Priestia megaterium strain N447-3]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCGGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCAGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGATGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTACGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CGGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATACTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTGTATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCTGAAAGTTTAACCGGCGGTTTATTTAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATAAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGAG
TAGCCTATAAAGGTCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGTCGCCAGGGGATTCGTTCACGAACAGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.479
  cinA Streptococcus mitis SK321

46.429

100

0.472
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

45.122

99.274

0.448
  cinA Streptococcus suis isolate S10

39.683

91.525

0.363