Detailed information NTG0500482

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F11EC_RS14220
• Genome accession: NZ_CP076123
• Coordinates: 2968303..2969295 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain F11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2963303..2974295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F11EC_RS14200 (F11EC_02782)	ygbM	2963934..2964710 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
F11EC_RS14205 (F11EC_02783)	ygbN	2964799..2966163 (+)	1365	WP_000104433.1	GntP family transporter	-
F11EC_RS14210 (F11EC_02784)	-	2966306..2967349 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
F11EC_RS14215 (F11EC_02785)	-	2967574..2968125 (+)	552	WP_001179442.1	flavodoxin family protein	-
F11EC_RS14220 (F11EC_02786)	rpoS	2968303..2969295 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F11EC_RS14225 (F11EC_02787)	nlpD	2969358..2970452 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
F11EC_RS14230 (F11EC_02788)	pcm	2970637..2971263 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
F11EC_RS14235 (F11EC_02789)	surE	2971257..2972018 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F11EC_RS14240 (F11EC_02790)	truD	2971999..2973048 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
F11EC_RS14245 (F11EC_02791)	ispF	2973045..2973524 (-)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F11EC_RS14250 (F11EC_02792)	ispD	2973524..2974234 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=500482 F11EC_RS14220 WP_000081550.1 2968303..2969295(-) (rpoS) [Escherichia coli strain F11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=500482 F11EC_RS14220 WP_000081550.1 2968303..2969295(-) (rpoS) [Escherichia coli strain F11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715