Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | HK81_RS16675 | Genome accession | NC_021848 |
| Coordinates | 1914044..1914328 (-) | Length | 94 a.a. |
| NCBI ID | WP_162142214.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus O1:K33 str. CDC_K4557 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1909044..1919328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK81_RS16650 (M636_17040) | - | 1909537..1910751 (+) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
| HK81_RS16655 (M636_17045) | yfbR | 1910843..1911427 (+) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| HK81_RS16660 (M636_17050) | - | 1911440..1912774 (+) | 1335 | WP_041954079.1 | anti-phage deoxyguanosine triphosphatase | - |
| HK81_RS16665 (M636_17055) | - | 1912784..1913398 (-) | 615 | WP_005482520.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| HK81_RS16670 (M636_17060) | rrtA | 1913402..1913953 (+) | 552 | WP_020904050.1 | rhombosortase | - |
| HK81_RS16675 (M636_17065) | comEA | 1914044..1914328 (-) | 285 | WP_162142214.1 | ComEA family DNA-binding protein | Machinery gene |
| HK81_RS16680 (M636_17070) | ppiD | 1914479..1916338 (-) | 1860 | WP_020904051.1 | peptidylprolyl isomerase | - |
| HK81_RS16685 (M636_17075) | - | 1916538..1916810 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10239.87 Da Isoelectric Point: 5.8425
>NTDB_id=49907 HK81_RS16675 WP_162142214.1 1914044..1914328(-) (comEA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGSFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGSFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=49907 HK81_RS16675 WP_162142214.1 1914044..1914328(-) (comEA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCTCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCTCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
98.936 |
100 |
0.989 |
| comEA | Vibrio campbellii strain DS40M4 |
76.842 |
100 |
0.777 |
| comEA | Vibrio cholerae C6706 |
61.702 |
100 |
0.617 |
| comEA | Vibrio cholerae strain A1552 |
61.702 |
100 |
0.617 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |