Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ISN38_RS15165 Genome accession   NZ_CP063993
Coordinates   3563901..3565160 (-) Length   419 a.a.
NCBI ID   WP_206710334.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain XtLr8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3558901..3570160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN38_RS15140 (ISN38_15135) - 3559952..3560167 (+) 216 WP_241753949.1 hypothetical protein -
  ISN38_RS15145 (ISN38_15140) - 3560266..3560943 (+) 678 WP_003466405.1 response regulator transcription factor -
  ISN38_RS15150 (ISN38_15145) - 3560936..3562270 (+) 1335 WP_058359046.1 HAMP domain-containing sensor histidine kinase -
  ISN38_RS15155 (ISN38_15150) coaE 3562397..3563017 (-) 621 WP_206710333.1 dephospho-CoA kinase -
  ISN38_RS15160 (ISN38_15155) - 3563031..3563894 (-) 864 WP_003477103.1 A24 family peptidase -
  ISN38_RS15165 (ISN38_15160) pilC 3563901..3565160 (-) 1260 WP_206710334.1 type II secretion system F family protein Machinery gene
  ISN38_RS15170 (ISN38_15165) pilA/pilAI 3565551..3565973 (+) 423 WP_081320414.1 pilin Machinery gene
  ISN38_RS15175 (ISN38_15170) - 3566045..3566455 (+) 411 WP_081320415.1 pilin -
  ISN38_RS15180 (ISN38_15175) pilB 3566797..3568533 (+) 1737 WP_206710335.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN38_RS15185 (ISN38_15180) - 3568708..3569160 (-) 453 WP_230812364.1 Fic family protein -
  ISN38_RS15190 (ISN38_15185) - 3569157..3569339 (-) 183 WP_068873434.1 YhfG family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45391.55 Da        Isoelectric Point: 10.1709

>NTDB_id=498381 ISN38_RS15165 WP_206710334.1 3563901..3565160(-) (pilC) [Xanthomonas translucens pv. undulosa strain XtLr8]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMGVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWLL
LLIVLVGSIVGFIFAYKRSPSMQHGMDKLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=498381 ISN38_RS15165 WP_206710334.1 3563901..3565160(-) (pilC) [Xanthomonas translucens pv. undulosa strain XtLr8]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGGTGTGGCGCTGCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCAGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTTGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCATCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CAAGTTGATTCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTGCTGCGCATGCGTGACGACGTGTCGGTGGGCTACCCCGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTACCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Legionella pneumophila strain ERS1305867

51.485

96.42

0.496
  pilC Acinetobacter baylyi ADP1

50.49

97.375

0.492
  pilC Acinetobacter baumannii D1279779

50.49

97.375

0.492
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria gonorrhoeae MS11

42.462

94.988

0.403
  pilG Neisseria meningitidis 44/76-A

41.855

95.227

0.399
  pilC Vibrio campbellii strain DS40M4

39.798

94.749

0.377
  pilC Thermus thermophilus HB27

38.75

95.465

0.37