Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SSUD9_RS04070 Genome accession   NC_017620
Coordinates   826501..827163 (+) Length   220 a.a.
NCBI ID   WP_002935348.1    Uniprot ID   A0AB37G4C2
Organism   Streptococcus suis D9     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 821501..832163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS04050 (SSUD9_0817) - 822237..823166 (-) 930 WP_002937175.1 ABC transporter substrate-binding protein -
  SSUD9_RS04055 (SSUD9_0818) - 823179..823964 (-) 786 WP_014636900.1 ABC transporter ATP-binding protein -
  SSUD9_RS04060 (SSUD9_0819) - 824116..825541 (-) 1426 Protein_755 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SSUD9_RS04065 (SSUD9_0821) - 825688..826434 (+) 747 WP_014636901.1 lysophospholipid acyltransferase family protein -
  SSUD9_RS04070 (SSUD9_0822) comEA/celA/cilE 826501..827163 (+) 663 WP_002935348.1 helix-hairpin-helix domain-containing protein Machinery gene
  SSUD9_RS04075 (SSUD9_0823) comEC/celB 827147..829384 (+) 2238 WP_014636902.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SSUD9_RS11430 (SSUD9_0824) - 829386..829529 (+) 144 WP_002935351.1 transposase -
  SSUD9_RS04085 (SSUD9_0826) - 829708..830364 (+) 657 WP_002935353.1 CBS domain-containing protein -
  SSUD9_RS04090 (SSUD9_0827) - 830649..831938 (-) 1290 WP_014636903.1 IS4-like element ISSsu2 family transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23297.93 Da        Isoelectric Point: 4.0751

>NTDB_id=49735 SSUD9_RS04070 WP_002935348.1 826501..827163(+) (comEA/celA/cilE) [Streptococcus suis D9]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFPQTAQTSSSSDLVEETSTEASEEPSQLVVDVK
GAVVKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSSEEKSTSQVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=49735 SSUD9_RS04070 WP_002935348.1 826501..827163(+) (comEA/celA/cilE) [Streptococcus suis D9]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCCGCAGTGGCTGGCTTGCT
AATGGCGACGTTCTTAATATTCAGCCAACCAGCCAAGTCTGATCAGACAGGCCTGACAGATTTTCCGCAGACCGCACAAA
CTTCTAGCAGCTCTGACTTGGTCGAGGAAACCAGTACAGAAGCAAGTGAAGAGCCCAGCCAGCTGGTTGTTGATGTCAAA
GGAGCGGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAGGCGGCTGGTGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGCAAGG
ACGAAAACATCTCGGTGGTGGCTAGCACGACTGCTAGCTCTGCTATGTCCTCAGAAGAAAAAAGCACAAGTCAGGTCAAT
CTGAATACGGCGACCGAGGCTGACTTGCAGACCATTTCTGGTATTGGTGCCAAGCGAGCGACGGACATTATCGCCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTGTCGGGCATCGGCGACAAGACTATGGAAAGCATCC
GGCCTTATGTCACGGTTGAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(156-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

48.848

98.636

0.482
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae D39

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae R6

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.248

99.091

0.468
  comEA/celA/cilE Streptococcus mitis SK321

46.154

100

0.464
  comEA Streptococcus thermophilus LMD-9

59.494

71.818

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

37.168

100

0.382
  comEA Bacillus subtilis subsp. subtilis str. 168

37.915

95.909

0.364

Multiple sequence alignment