Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IH404_RS05330 Genome accession   NZ_CP063780
Coordinates   1208132..1209340 (-) Length   402 a.a.
NCBI ID   WP_194440117.1    Uniprot ID   A0A7S7S5U5
Organism   Pseudomonas sp. OST1909     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1203132..1214340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IH404_RS05295 (IH404_05295) - 1204353..1204526 (-) 174 WP_005784671.1 DUF3094 family protein -
  IH404_RS05300 (IH404_05300) - 1204580..1205209 (-) 630 WP_003188431.1 DUF1780 domain-containing protein -
  IH404_RS05305 (IH404_05305) - 1205484..1206173 (+) 690 WP_005784673.1 energy-coupling factor ABC transporter permease -
  IH404_RS05310 (IH404_05310) - 1206240..1206455 (+) 216 WP_003171680.1 hypothetical protein -
  IH404_RS05315 (IH404_05315) yacG 1206452..1206652 (-) 201 WP_005784677.1 DNA gyrase inhibitor YacG -
  IH404_RS05320 (IH404_05320) coaE 1206649..1207272 (-) 624 WP_032877844.1 dephospho-CoA kinase -
  IH404_RS05325 (IH404_05325) pilD 1207269..1208135 (-) 867 WP_194440116.1 A24 family peptidase Machinery gene
  IH404_RS05330 (IH404_05330) pilC 1208132..1209340 (-) 1209 WP_194440117.1 type II secretion system F family protein Machinery gene
  IH404_RS05335 (IH404_05335) - 1209540..1209953 (+) 414 WP_005784685.1 pilin -
  IH404_RS05345 (IH404_05345) - 1210240..1210545 (+) 306 WP_005784687.1 DUF6388 family protein -
  IH404_RS05350 (IH404_05350) nadC 1210620..1211468 (-) 849 WP_005784689.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IH404_RS05355 (IH404_05355) - 1211714..1213867 (+) 2154 WP_194440118.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43754.29 Da        Isoelectric Point: 9.7686

>NTDB_id=496770 IH404_RS05330 WP_194440117.1 1208132..1209340(-) (pilC) [Pseudomonas sp. OST1909]
MNDTSTIYAWEGINRKGRRVTGQTAGDSLALIKAQLRQQGICPERVCKKPRSRSAFTPRILPADIALFTRQLATLLKAGI
PLLQAFDIISEGFENPQVRELVKALKQQIASGNNLAAALRLHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPVAVLVVATLVSTVLLIHVVPQFQHLFAGVDSQLPGFTLGVIALSEFLQQAWWILVLGLVVGVGGLRHAY
RRYPGFRHCLQGHLLKAPLAGKLLQKTAVARYARTLSTTFAAGVPLVQALGSVAGAVGNDPFKQAIERMRHDVSTGMQLN
QSMHSCGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGAIVGALVIAMYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=496770 IH404_RS05330 WP_194440117.1 1208132..1209340(-) (pilC) [Pseudomonas sp. OST1909]
ATGAACGACACGTCAACGATCTATGCCTGGGAAGGTATCAACCGCAAAGGACGCAGGGTGACCGGGCAAACCGCTGGCGA
CAGCCTTGCGCTGATCAAGGCACAACTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGTGCAAGAAGCCTCGATCACGCT
CGGCTTTCACCCCGCGAATCCTGCCAGCCGATATCGCCCTGTTTACTCGCCAGTTGGCGACCTTGCTCAAAGCCGGCATC
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAAGGTTTTGAAAACCCGCAGGTGCGTGAACTGGTCAAGGCGTTGAAACA
ACAGATCGCCAGCGGCAATAACCTGGCCGCAGCGCTACGCCTGCATCCGCGTTATTTCGATGACCTGTACTGCAACCTGG
TAGCTGCCGGAGAACAGGCCGGAGCTCTGGAAACCCTGCTGGAGCGCGTGGCGATTCATCTGGAAAAAAGCCAACAGCTC
AAAGCCAGGATCAAAAAAGCCATGACTTACCCTGTCGCAGTCCTGGTAGTCGCTACACTAGTCAGCACAGTGCTGTTGAT
ACACGTCGTGCCTCAGTTCCAGCATCTGTTTGCCGGGGTCGACAGCCAACTGCCCGGGTTTACCCTGGGGGTCATTGCCC
TGTCCGAGTTCTTGCAACAAGCGTGGTGGATACTCGTGCTGGGCCTGGTCGTGGGGGTGGGCGGGCTGCGCCACGCCTAC
CGCCGTTACCCTGGCTTTCGCCATTGTCTGCAAGGGCATTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGCAAAAAAC
CGCCGTCGCCCGCTACGCCCGCACGCTTTCGACCACGTTTGCAGCGGGTGTCCCGCTGGTCCAGGCATTGGGCTCGGTAG
CCGGAGCCGTCGGCAATGACCCCTTCAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGCACAGCTGCGGTTTGTTTCCCGGCATGGCGATCCAGATGACCGCCATTGGAGAGGAGTCCGGCACCCTGGA
CCGGATGCTGGAAAAAGTCGCGAACCACTACGAGTCGGACGTCGACACCCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTTGTCCTGGGGGCCATTGTCGGCGCGCTGGTGATCGCGATGTACCTGCCGGTCTTTCAATTGGGTACG
GCCTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S5U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

98.507

0.57
  pilC Acinetobacter baylyi ADP1

50.758

98.507

0.5
  pilC Acinetobacter baumannii D1279779

49.367

98.259

0.485
  pilC Legionella pneumophila strain ERS1305867

48.363

98.756

0.478
  pilC Thermus thermophilus HB27

38.366

100

0.386
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilC Vibrio cholerae strain A1552

38.52

97.512

0.376
  pilC Vibrio campbellii strain DS40M4

37.879

98.507

0.373
  pilG Neisseria meningitidis 44/76-A

39.37

94.776

0.373