Detailed information NTG0496769

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IH404_RS05325
• Genome accession: NZ_CP063780
• Coordinates: 1207269..1208135 (-)
• Length: 288 a.a.
• NCBI ID: WP_194440116.1
• Uniprot ID: A0A7S7S4Z1
• Organism: Pseudomonas sp. OST1909
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1202269..1213135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IH404_RS05290 (IH404_05290)	-	1202994..1204292 (-)	1299	WP_005784669.1	NAD(P)/FAD-dependent oxidoreductase	-
IH404_RS05295 (IH404_05295)	-	1204353..1204526 (-)	174	WP_005784671.1	DUF3094 family protein	-
IH404_RS05300 (IH404_05300)	-	1204580..1205209 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
IH404_RS05305 (IH404_05305)	-	1205484..1206173 (+)	690	WP_005784673.1	energy-coupling factor ABC transporter permease	-
IH404_RS05310 (IH404_05310)	-	1206240..1206455 (+)	216	WP_003171680.1	hypothetical protein	-
IH404_RS05315 (IH404_05315)	yacG	1206452..1206652 (-)	201	WP_005784677.1	DNA gyrase inhibitor YacG	-
IH404_RS05320 (IH404_05320)	coaE	1206649..1207272 (-)	624	WP_032877844.1	dephospho-CoA kinase	-
IH404_RS05325 (IH404_05325)	pilD	1207269..1208135 (-)	867	WP_194440116.1	A24 family peptidase	Machinery gene
IH404_RS05330 (IH404_05330)	pilC	1208132..1209340 (-)	1209	WP_194440117.1	type II secretion system F family protein	Machinery gene
IH404_RS05335 (IH404_05335)	-	1209540..1209953 (+)	414	WP_005784685.1	pilin	-
IH404_RS05345 (IH404_05345)	-	1210240..1210545 (+)	306	WP_005784687.1	DUF6388 family protein	-
IH404_RS05350 (IH404_05350)	nadC	1210620..1211468 (-)	849	WP_005784689.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31948.35 Da
• Isoelectric Point: 7.8587

>NTDB_id=496769 IH404_RS05325 WP_194440116.1 1207269..1208135(-) (pilD) [Pseudomonas sp. OST1909]
MSLLLSEQPWAFACMALVLGLIIGSFINVLVWRLPKMLEREWRAQAHEVLGLPTEPAGPVYNLMRPNSCCPRCNQPIRPW
ENIPLLSFLMLRGRCAHCREPISVRYPLTEVTCALITAAVAWHFGFGWQAAAVMLLSWGLLAMSLIDLDHQLLPDVLVLP
LLWLGLVLNSADLLAILPDALWGAVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLMGVF
AGLILLRLRKVQTSTPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=496769 IH404_RS05325 WP_194440116.1 1207269..1208135(-) (pilD) [Pseudomonas sp. OST1909]
TTGAGCCTGCTGCTGAGCGAGCAGCCCTGGGCGTTTGCCTGCATGGCACTGGTGCTCGGCCTGATCATCGGCAGTTTCAT
CAACGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAACGCGAATGGCGTGCCCAGGCGCATGAGGTCCTCGGCCTGCCAA
CCGAGCCCGCCGGGCCGGTGTACAACCTGATGCGCCCGAACTCCTGCTGTCCGCGCTGCAACCAGCCGATTCGGCCCTGG
GAAAATATCCCGCTGCTCAGCTTCCTGATGCTCAGGGGTCGTTGCGCTCATTGCCGTGAGCCCATCAGCGTCCGCTATCC
CCTGACCGAAGTGACGTGCGCGCTGATCACCGCCGCCGTTGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGCTGCGGTGA
TGTTGCTGAGCTGGGGCTTGCTGGCCATGAGCCTGATTGACCTGGACCACCAATTGCTGCCGGATGTGCTGGTACTGCCG
CTGCTCTGGCTGGGGCTGGTCCTCAACAGCGCTGACCTGCTGGCAATACTGCCCGATGCACTGTGGGGCGCGGTCATTGG
CTACATGAGCCTATGGAGCGTGTTCTGGCTATTCAAGCTGGCTACCGGCAAGGATGGCATGGGCCATGGCGATTTCAAGT
TATTGGCATTGCTGGGGGCCTGGGGGGGCTGGCAGATCCTGCCAATGACGTTGCTGATGGCCTCGCTGATGGGCGTGTTT
GCAGGGCTGATCCTACTGCGCTTGCGCAAGGTCCAAACGTCGACGCCGATGCCCTTTGGGCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

3D structure

• AlphaFold DB: A0A7S7S4Z1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.857	97.222	0.514
pilD	Vibrio campbellii strain DS40M4	49.462	96.875	0.479
pilD	Acinetobacter nosocomialis M2	47.253	94.792	0.448
pilD	Acinetobacter baumannii D1279779	46.739	95.833	0.448
pilD	Neisseria gonorrhoeae MS11	46.094	88.889	0.41