Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | INQ40_RS10080 | Genome accession | NZ_CP063772 |
| Coordinates | 2209029..2209526 (+) | Length | 165 a.a. |
| NCBI ID | WP_194340326.1 | Uniprot ID | - |
| Organism | Lysobacter sp. H21R4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2196233..2228294 | 2209029..2209526 | within | 0 |
Gene organization within MGE regions
Location: 2196233..2228294
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INQ40_RS10020 (INQ40_10020) | - | 2196233..2197336 (+) | 1104 | WP_228481988.1 | M23 family metallopeptidase | - |
| INQ40_RS10025 (INQ40_10025) | - | 2198211..2198705 (-) | 495 | WP_194340318.1 | hypothetical protein | - |
| INQ40_RS10030 (INQ40_10030) | - | 2199132..2199620 (-) | 489 | WP_194340319.1 | hypothetical protein | - |
| INQ40_RS10035 (INQ40_10035) | - | 2199671..2199862 (-) | 192 | Protein_1954 | IS5/IS1182 family transposase | - |
| INQ40_RS10040 (INQ40_10040) | - | 2199925..2200710 (-) | 786 | WP_194340320.1 | hypothetical protein | - |
| INQ40_RS13085 | - | 2200704..2203904 (-) | 3201 | WP_345776520.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| INQ40_RS10055 (INQ40_10055) | - | 2204408..2207002 (-) | 2595 | WP_194340321.1 | type VI secretion system Vgr family protein | - |
| INQ40_RS10060 (INQ40_10060) | - | 2207254..2207556 (-) | 303 | WP_194340322.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| INQ40_RS10065 (INQ40_10065) | - | 2207544..2207801 (-) | 258 | WP_194340323.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| INQ40_RS10070 (INQ40_10070) | - | 2207922..2208275 (+) | 354 | WP_194340324.1 | hypothetical protein | - |
| INQ40_RS10075 (INQ40_10075) | - | 2208236..2208796 (+) | 561 | WP_194340325.1 | hypothetical protein | - |
| INQ40_RS10080 (INQ40_10080) | pilA2 | 2209029..2209526 (+) | 498 | WP_194340326.1 | pilin | Machinery gene |
| INQ40_RS10085 (INQ40_10085) | - | 2209691..2209987 (+) | 297 | WP_194340327.1 | hypothetical protein | - |
| INQ40_RS10090 (INQ40_10090) | - | 2210134..2210448 (+) | 315 | WP_194340328.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| INQ40_RS10095 (INQ40_10095) | nadS | 2210451..2210741 (+) | 291 | WP_194340329.1 | NadS family protein | - |
| INQ40_RS13090 | - | 2211206..2211532 (+) | 327 | WP_228482201.1 | Fic family protein | - |
| INQ40_RS13095 | - | 2211590..2211916 (+) | 327 | WP_228481989.1 | hypothetical protein | - |
| INQ40_RS13180 | - | 2211975..2212055 (+) | 81 | Protein_1968 | hypothetical protein | - |
| INQ40_RS10110 (INQ40_10110) | - | 2212236..2212418 (-) | 183 | WP_228481990.1 | hypothetical protein | - |
| INQ40_RS10115 (INQ40_10115) | pilB | 2212465..2214195 (+) | 1731 | WP_194340330.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| INQ40_RS10120 (INQ40_10120) | - | 2214293..2214595 (+) | 303 | WP_228481991.1 | helix-turn-helix transcriptional regulator | - |
| INQ40_RS10125 (INQ40_10125) | - | 2214592..2215821 (+) | 1230 | WP_194340331.1 | type II toxin-antitoxin system HipA family toxin | - |
| INQ40_RS10130 (INQ40_10130) | pilC | 2216043..2217302 (+) | 1260 | WP_194340332.1 | type II secretion system F family protein | Machinery gene |
| INQ40_RS10135 (INQ40_10135) | pilD | 2217316..2218179 (+) | 864 | WP_194340333.1 | A24 family peptidase | Machinery gene |
| INQ40_RS10140 (INQ40_10140) | coaE | 2218265..2218885 (+) | 621 | WP_194340334.1 | dephospho-CoA kinase | - |
| INQ40_RS10145 (INQ40_10145) | - | 2219008..2220000 (-) | 993 | WP_194340335.1 | Nudix family hydrolase | - |
| INQ40_RS10150 (INQ40_10150) | secA | 2220076..2222820 (-) | 2745 | WP_194340336.1 | preprotein translocase subunit SecA | - |
| INQ40_RS10155 (INQ40_10155) | - | 2222980..2223813 (-) | 834 | WP_228482202.1 | M23 family metallopeptidase | - |
| INQ40_RS10160 (INQ40_10160) | - | 2223896..2224354 (+) | 459 | WP_194340338.1 | DUF721 domain-containing protein | - |
| INQ40_RS10165 (INQ40_10165) | lpxC | 2224547..2225464 (-) | 918 | WP_194340339.1 | UDP-3-O-acyl-N-acetylglucosamine deacetylase | - |
| INQ40_RS10170 (INQ40_10170) | ftsZ | 2225699..2226934 (-) | 1236 | WP_194340340.1 | cell division protein FtsZ | - |
| INQ40_RS10175 (INQ40_10175) | ftsA | 2227044..2228294 (-) | 1251 | WP_043958191.1 | cell division protein FtsA | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 16782.37 Da Isoelectric Point: 8.8449
>NTDB_id=496700 INQ40_RS10080 WP_194340326.1 2209029..2209526(+) (pilA2) [Lysobacter sp. H21R4]
MKNVQKGFTLIELMIVVAIIAILAAIALPAYQDYTIRSKVSEGVVLASALKLAATETFQSRGPGSMECSSVATCDAIGAT
LMDATALAGNKNVASVTSASTGVITITYKPSVVPAANNTLVLTPVGPNGTTALNLSSAAAGTQVNWTCSTGGTLAQKYRP
ANCRS
MKNVQKGFTLIELMIVVAIIAILAAIALPAYQDYTIRSKVSEGVVLASALKLAATETFQSRGPGSMECSSVATCDAIGAT
LMDATALAGNKNVASVTSASTGVITITYKPSVVPAANNTLVLTPVGPNGTTALNLSSAAAGTQVNWTCSTGGTLAQKYRP
ANCRS
Nucleotide
Download Length: 498 bp
>NTDB_id=496700 INQ40_RS10080 WP_194340326.1 2209029..2209526(+) (pilA2) [Lysobacter sp. H21R4]
ATGAAGAACGTACAGAAAGGTTTTACGCTCATCGAGCTGATGATCGTTGTTGCGATCATTGCAATTTTGGCGGCTATTGC
GTTGCCGGCTTATCAGGATTATACGATTCGGTCCAAGGTTTCCGAAGGCGTAGTACTGGCGTCCGCGCTAAAGCTGGCCG
CAACTGAGACATTTCAGTCTCGGGGGCCGGGCAGCATGGAATGTAGCTCCGTTGCAACCTGTGACGCGATTGGTGCGACT
TTGATGGACGCGACGGCCCTAGCAGGTAATAAAAACGTCGCCAGCGTTACGAGCGCCTCAACCGGCGTGATCACGATTAC
TTATAAGCCGTCAGTAGTTCCTGCCGCTAACAACACCCTTGTCCTTACGCCAGTTGGTCCGAATGGTACGACTGCGCTGA
ACTTGTCCTCTGCCGCAGCCGGCACGCAGGTAAACTGGACGTGCAGCACGGGCGGTACGCTGGCGCAAAAATATCGCCCT
GCAAATTGCCGTTCGTAA
ATGAAGAACGTACAGAAAGGTTTTACGCTCATCGAGCTGATGATCGTTGTTGCGATCATTGCAATTTTGGCGGCTATTGC
GTTGCCGGCTTATCAGGATTATACGATTCGGTCCAAGGTTTCCGAAGGCGTAGTACTGGCGTCCGCGCTAAAGCTGGCCG
CAACTGAGACATTTCAGTCTCGGGGGCCGGGCAGCATGGAATGTAGCTCCGTTGCAACCTGTGACGCGATTGGTGCGACT
TTGATGGACGCGACGGCCCTAGCAGGTAATAAAAACGTCGCCAGCGTTACGAGCGCCTCAACCGGCGTGATCACGATTAC
TTATAAGCCGTCAGTAGTTCCTGCCGCTAACAACACCCTTGTCCTTACGCCAGTTGGTCCGAATGGTACGACTGCGCTGA
ACTTGTCCTCTGCCGCAGCCGGCACGCAGGTAAACTGGACGTGCAGCACGGGCGGTACGCTGGCGCAAAAATATCGCCCT
GCAAATTGCCGTTCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
49.693 |
98.788 |
0.491 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
43.407 |
100 |
0.479 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.466 |
98.788 |
0.479 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
38.342 |
100 |
0.448 |
| comP | Acinetobacter baylyi ADP1 |
39.506 |
98.182 |
0.388 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.095 |
100 |
0.37 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.145 |
100 |
0.364 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
34.884 |
100 |
0.364 |