Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INQ40_RS10135 Genome accession   NZ_CP063772
Coordinates   2217316..2218179 (+) Length   287 a.a.
NCBI ID   WP_194340333.1    Uniprot ID   -
Organism   Lysobacter sp. H21R4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2212316..2223179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ40_RS10115 (INQ40_10115) pilB 2212465..2214195 (+) 1731 WP_194340330.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INQ40_RS10120 (INQ40_10120) - 2214293..2214595 (+) 303 WP_228481991.1 helix-turn-helix transcriptional regulator -
  INQ40_RS10125 (INQ40_10125) - 2214592..2215821 (+) 1230 WP_194340331.1 type II toxin-antitoxin system HipA family toxin -
  INQ40_RS10130 (INQ40_10130) pilC 2216043..2217302 (+) 1260 WP_194340332.1 type II secretion system F family protein Machinery gene
  INQ40_RS10135 (INQ40_10135) pilD 2217316..2218179 (+) 864 WP_194340333.1 A24 family peptidase Machinery gene
  INQ40_RS10140 (INQ40_10140) coaE 2218265..2218885 (+) 621 WP_194340334.1 dephospho-CoA kinase -
  INQ40_RS10145 (INQ40_10145) - 2219008..2220000 (-) 993 WP_194340335.1 Nudix family hydrolase -
  INQ40_RS10150 (INQ40_10150) secA 2220076..2222820 (-) 2745 WP_194340336.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31644.53 Da        Isoelectric Point: 8.7079

>NTDB_id=496703 INQ40_RS10135 WP_194340333.1 2217316..2218179(+) (pilD) [Lysobacter sp. H21R4]
MAFLDQNPGIGYPLVAGFGLLLGSFLNVVILRMPRRMEWQWQRDSREILGEPETYDPPPPGIVVERSHCPHCKHQLSWYE
NIPVFSWLALRGRCRNCKTRISAQYPLVELLTAVLMVACVARFGFGWQGFGAMVFTCFLIALSGIDLRTQLLPDQLTLPL
MWLGLIAAVDNLYIAAKPAVIGAVVGYLSLWVVWWLFKQITGKEGMGHGDFKLLAAIGAWTGLAGILPTVLLSSLVGAII
GSIWLAAKGRDKATPIPFGPYLAVAGWIIFFWGEQLIGGYMRISGLA

Nucleotide


Download         Length: 864 bp        

>NTDB_id=496703 INQ40_RS10135 WP_194340333.1 2217316..2218179(+) (pilD) [Lysobacter sp. H21R4]
ATGGCATTCCTCGATCAGAACCCCGGAATCGGCTACCCGCTGGTCGCCGGTTTCGGCCTGCTGCTGGGCAGTTTCCTCAA
TGTGGTGATCCTGCGCATGCCGCGCCGGATGGAGTGGCAATGGCAGCGCGACAGCCGCGAGATCCTCGGCGAGCCGGAGA
CCTACGATCCGCCACCGCCGGGCATCGTGGTGGAGCGCTCGCACTGCCCGCATTGCAAACACCAGCTGTCCTGGTACGAG
AACATCCCGGTGTTCAGCTGGCTGGCCCTGCGCGGGCGCTGCCGCAACTGCAAGACGCGCATCTCGGCGCAGTACCCGCT
GGTGGAGTTGCTGACGGCGGTGTTGATGGTGGCCTGCGTGGCGCGCTTCGGCTTCGGCTGGCAGGGCTTCGGGGCGATGG
TGTTCACCTGCTTCCTGATCGCGCTGTCCGGCATCGACCTGCGGACCCAGTTGCTGCCCGACCAGCTGACCCTGCCATTG
ATGTGGCTGGGGTTGATCGCGGCCGTCGACAACCTCTACATCGCCGCCAAACCGGCGGTGATCGGCGCCGTGGTCGGCTA
TCTGAGCCTGTGGGTGGTGTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAACTGC
TGGCCGCGATCGGCGCATGGACCGGCCTCGCTGGCATCCTGCCGACGGTGCTGCTGTCCTCGCTGGTCGGCGCCATCATC
GGCTCGATCTGGCTGGCAGCGAAGGGCCGCGACAAGGCGACGCCGATCCCGTTCGGCCCGTATCTCGCCGTCGCCGGCTG
GATCATCTTCTTCTGGGGCGAGCAGCTGATCGGCGGGTATATGCGGATCTCCGGACTGGCGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

48.264

100

0.484
  pilD Acinetobacter nosocomialis M2

48.227

98.258

0.474
  pilD Vibrio cholerae strain A1552

49.091

95.819

0.47
  pilD Vibrio campbellii strain DS40M4

49.438

93.031

0.46
  pilD Neisseria gonorrhoeae MS11

47.104

90.244

0.425