Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IM698_RS06730 Genome accession   NZ_CP063682
Coordinates   1479978..1481207 (-) Length   409 a.a.
NCBI ID   WP_260810990.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1474978..1486207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS06690 (IM698_06675) rpsP 1475011..1475259 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  IM698_RS06695 (IM698_06680) rimM 1475284..1475838 (+) 555 WP_248372804.1 ribosome maturation factor RimM -
  IM698_RS06700 (IM698_06685) trmD 1475865..1476605 (+) 741 WP_248372803.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IM698_RS06705 (IM698_06690) rplS 1476665..1477018 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  IM698_RS06710 (IM698_06695) yacG 1477379..1477576 (-) 198 WP_004735515.1 DNA gyrase inhibitor YacG -
  IM698_RS06715 (IM698_06700) zapD 1477658..1478398 (-) 741 WP_248372797.1 cell division protein ZapD -
  IM698_RS06720 (IM698_06705) coaE 1478425..1479039 (-) 615 WP_048612337.1 dephospho-CoA kinase -
  IM698_RS06725 (IM698_06710) pilD 1479042..1479911 (-) 870 WP_016799246.1 prepilin peptidase Machinery gene
  IM698_RS06730 (IM698_06715) pilC 1479978..1481207 (-) 1230 WP_260810990.1 type II secretion system F family protein Machinery gene
  IM698_RS06735 (IM698_06720) pilB 1481223..1482908 (-) 1686 WP_260810991.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IM698_RS06740 (IM698_06725) - 1482915..1483370 (-) 456 WP_017071017.1 pilin -
  IM698_RS06745 (IM698_06730) nadC 1483625..1484515 (-) 891 WP_260810992.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IM698_RS06750 (IM698_06735) ampD 1484599..1485198 (+) 600 WP_260810993.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45253.35 Da        Isoelectric Point: 10.1582

>NTDB_id=496218 IM698_RS06730 WP_260810990.1 1479978..1481207(-) (pilC) [Vibrio splendidus strain ED144]
MSSKSKQSQLKSYHWKGINSSGKKVSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDFYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVIVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLHLSHWMQAYSFYAAVSIGLVVL
IIYQLCQRSHSIRLSVSRLGLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=496218 IM698_RS06730 WP_260810990.1 1479978..1481207(-) (pilC) [Vibrio splendidus strain ED144]
ATGAGTAGCAAGTCCAAACAGTCACAATTAAAAAGCTATCACTGGAAAGGCATTAACAGCTCTGGCAAGAAAGTATCAGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAGCACATTCAGATTAAGAAGATCAAAAAGA
AAAGCATCTCAGCAATCACTCGTTTAACTCATCGAGTCAAAGCCAAAGATATCACTATTTTGACTCGCCAACTGGCTACC
ATGTTGGCTACTGGTGTGCCAATCGTGCAGGCCATCAAGTTAGTGTCAGACAATCACCGCAAAGCAGAAATGAAATCGAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGCGAACCGCAAGCCGCCACTTTGATG
ATTTCTATACTGATTTAGTCGCGACAGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACATACCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTAGTCATCGTTGCACTGACTGT
CTCTTATTTAATGCTGACCATGGTGATTCCGGAATTTGAGTCGATGTTTTCAGGCTTCGGTGCTGATCTACCGTGGTTTA
CTCAACAGGTACTCCATCTTTCTCACTGGATGCAAGCTTACAGCTTTTATGCGGCTGTAAGCATCGGGCTTGTTGTCCTG
ATTATTTACCAACTGTGTCAGCGCTCCCACTCGATCAGACTGTCTGTTAGCCGGTTAGGATTACGTTTCCCTGTTCTTGG
TGGGGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGCTCTGGGATTCCCATCTTAA
TGAGCCTCAAAACCACCGCAAAGACTGCAGGCAATCTGCATTATGAATCGGCAATCATCGAGGTTCACCGTGAGACTGCC
GCAGGCATGCCGATGTACATTGCAATGCGCAATACCAATGCCTTCCCGGAGATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACGGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.75

97.8

0.78
  pilC Vibrio campbellii strain DS40M4

73.153

99.267

0.726
  pilC Acinetobacter baylyi ADP1

41.32

100

0.413
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Legionella pneumophila strain ERS1305867

42.065

97.066

0.408
  pilG Neisseria gonorrhoeae MS11

40.547

98.289

0.399
  pilG Neisseria meningitidis 44/76-A

40.299

98.289

0.396
  pilC Pseudomonas stutzeri DSM 10701

40.152

96.822

0.389