Detailed information NTG0496217

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IM698_RS06725
• Genome accession: NZ_CP063682
• Coordinates: 1479042..1479911 (-)
• Length: 289 a.a.
• NCBI ID: WP_016799246.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain ED144
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1474042..1484911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM698_RS06690 (IM698_06675)	rpsP	1475011..1475259 (+)	249	WP_004735508.1	30S ribosomal protein S16	-
IM698_RS06695 (IM698_06680)	rimM	1475284..1475838 (+)	555	WP_248372804.1	ribosome maturation factor RimM	-
IM698_RS06700 (IM698_06685)	trmD	1475865..1476605 (+)	741	WP_248372803.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IM698_RS06705 (IM698_06690)	rplS	1476665..1477018 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
IM698_RS06710 (IM698_06695)	yacG	1477379..1477576 (-)	198	WP_004735515.1	DNA gyrase inhibitor YacG	-
IM698_RS06715 (IM698_06700)	zapD	1477658..1478398 (-)	741	WP_248372797.1	cell division protein ZapD	-
IM698_RS06720 (IM698_06705)	coaE	1478425..1479039 (-)	615	WP_048612337.1	dephospho-CoA kinase	-
IM698_RS06725 (IM698_06710)	pilD	1479042..1479911 (-)	870	WP_016799246.1	prepilin peptidase	Machinery gene
IM698_RS06730 (IM698_06715)	pilC	1479978..1481207 (-)	1230	WP_260810990.1	type II secretion system F family protein	Machinery gene
IM698_RS06735 (IM698_06720)	pilB	1481223..1482908 (-)	1686	WP_260810991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IM698_RS06740 (IM698_06725)	-	1482915..1483370 (-)	456	WP_017071017.1	pilin	-
IM698_RS06745 (IM698_06730)	nadC	1483625..1484515 (-)	891	WP_260810992.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32557.77 Da
• Isoelectric Point: 7.6347

>NTDB_id=496217 IM698_RS06725 WP_016799246.1 1479042..1479911(-) (pilD) [Vibrio splendidus strain ED144]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=496217 IM698_RS06725 WP_016799246.1 1479042..1479911(-) (pilD) [Vibrio splendidus strain ED144]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGTGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGCAAGTGCCACAGTTGTGCTAACCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCGCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTATTGCCAGATCAAATCACCTTGCCT
TTAGTTTGGTCTGGTATCGCTTTAGCACTGTTTAATATCAGCCCGGTATCGCTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCGCTTTGGTCTGTTTATTGGCTGTTCAAGCTATTAACAGGCAAAGAAGGCATGGGCTACGGTGATTTTA
AATTGTTAGCTGCATTAGGGGCGTGGCTTGGTTGGCAACATCTACCAATGATCATCCTTTTATCTTCGCTTGTTGGTCTT
GTGTTTGGTTTGATTCAACTTCGCTTGAAACAGCAAGGCATAGATAAAGCCTTTCCGTTTGGCCCCTACCTTGCGATTGC
GGGATGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	68.75	99.654	0.685
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436