Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   INR79_RS17850 Genome accession   NZ_CP063199
Coordinates   3935156..3936259 (-) Length   367 a.a.
NCBI ID   WP_223095391.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43132     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3930156..3941259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS17820 (INR79_17820) hemF 3930746..3931663 (-) 918 WP_022552141.1 oxygen-dependent coproporphyrinogen oxidase -
  INR79_RS17825 (INR79_17825) - 3931686..3932243 (-) 558 WP_223095383.1 L-threonylcarbamoyladenylate synthase -
  INR79_RS17830 (INR79_17830) purE 3932435..3932920 (+) 486 WP_223095385.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  INR79_RS17835 (INR79_17835) - 3932926..3934053 (+) 1128 WP_223095387.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  INR79_RS17840 (INR79_17840) - 3934099..3934668 (-) 570 WP_223095389.1 type I DNA topoisomerase -
  INR79_RS17845 (INR79_17845) - 3934680..3935153 (-) 474 WP_004406478.1 DUF494 family protein -
  INR79_RS17850 (INR79_17850) dprA 3935156..3936259 (-) 1104 WP_223095391.1 DNA-processing protein DprA Machinery gene
  INR79_RS17855 (INR79_17855) - 3936261..3937355 (-) 1095 WP_223095393.1 LysM peptidoglycan-binding domain-containing protein -
  INR79_RS17860 (INR79_17860) def 3937473..3937994 (+) 522 WP_004406486.1 peptide deformylase -
  INR79_RS17865 (INR79_17865) fmt 3938027..3938974 (+) 948 WP_223095395.1 methionyl-tRNA formyltransferase -
  INR79_RS17870 (INR79_17870) rsmB 3939061..3940341 (+) 1281 WP_022597308.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39499.86 Da        Isoelectric Point: 5.4099

>NTDB_id=493820 INR79_RS17850 WP_223095391.1 3935156..3936259(-) (dprA) [Vibrio sp. SCSIO 43132]
MTNNELRAWLTLSFTPQLGGQSLTRLLAIDSPVNILSSGPERWQAIGLKPKQIAYLQAQSHPEVEESLEWEAASDSHHIL
NLLDTDYPPLLKEVPSPPTTLFVKGEVSSLSAPQIAMVGSRNASIEGLQTAKAFAKDLSCNGLVVTSGLALGVDGYAHDG
ALEGGGRTVAVLGSGLECIYPARHRKLAARVVEQGALVSEFRPNTKPRPEHFPRRNRIISGLSVGVFVVEAAERSGSLIT
ARYAAEQGRDVFALPGSIHNPNARGGNALIKSGACLVQSSQDILQEVENLVSWSFSQQTSIFSEEAEQEELPFPELMANV
GIEATPVDILAERTHIPVHEVMMQLLELELSGHIVAVPGGYIRKGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=493820 INR79_RS17850 WP_223095391.1 3935156..3936259(-) (dprA) [Vibrio sp. SCSIO 43132]
ATGACGAACAATGAGTTACGAGCCTGGCTGACCTTAAGTTTCACCCCACAATTAGGCGGCCAGTCGTTGACTCGATTGCT
CGCTATTGATTCTCCCGTCAACATACTGTCTTCCGGTCCGGAGCGCTGGCAAGCCATTGGTCTTAAACCAAAACAGATCG
CTTACCTACAAGCTCAATCCCACCCAGAAGTAGAAGAAAGCCTTGAGTGGGAGGCGGCTTCTGATTCCCATCATATTCTC
AATTTGCTGGATACTGATTATCCGCCTCTGTTGAAAGAAGTCCCTTCACCGCCCACCACACTCTTTGTGAAAGGTGAAGT
GTCGTCTTTGAGTGCACCTCAAATCGCAATGGTGGGTAGCCGAAATGCCAGTATTGAAGGGCTGCAAACCGCAAAAGCCT
TCGCTAAAGACCTATCATGTAATGGGCTGGTTGTGACCAGCGGCCTGGCTTTGGGCGTAGATGGATATGCTCATGATGGA
GCATTGGAAGGAGGTGGCAGAACGGTTGCTGTATTGGGTTCTGGGTTGGAATGTATTTACCCGGCAAGGCATCGCAAGCT
TGCTGCCAGAGTTGTCGAGCAAGGGGCTCTGGTGTCAGAGTTTCGCCCGAACACCAAGCCTCGTCCTGAACATTTTCCCC
GTCGTAACCGAATCATCAGTGGATTATCGGTAGGTGTATTTGTCGTAGAAGCGGCAGAGCGCAGTGGCTCACTTATTACT
GCCCGCTATGCCGCAGAGCAGGGGCGCGATGTTTTTGCCTTACCGGGCTCAATTCATAACCCCAATGCCCGAGGTGGTAA
TGCGCTGATCAAGTCAGGTGCCTGCTTGGTTCAGTCCTCCCAAGATATCCTGCAGGAAGTTGAAAATTTAGTTTCTTGGT
CGTTTTCTCAACAAACATCTATATTTAGTGAAGAAGCCGAGCAAGAAGAATTGCCATTTCCCGAACTAATGGCTAACGTA
GGAATAGAAGCAACACCCGTTGATATTCTTGCAGAGCGGACCCATATACCTGTGCATGAAGTCATGATGCAACTACTGGA
ACTTGAGCTTTCAGGGCATATTGTTGCAGTACCTGGTGGCTATATTCGAAAGGGGAGGGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(315-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.289

98.91

0.646
  dprA Vibrio cholerae strain A1552

59.03

100

0.597
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.463
  dprA Neisseria meningitidis strain C311

38.75

100

0.422
  dprA Neisseria meningitidis MC58

38.75

100

0.422
  dprA Neisseria gonorrhoeae strain FA1090

38.191

100

0.414
  dprA Neisseria gonorrhoeae MS11

37.688

100

0.409
  dprA Legionella pneumophila strain ERS1305867

49.667

81.744

0.406
  dprA Haemophilus influenzae Rd KW20

43.314

93.733

0.406
  dprA Acinetobacter baylyi ADP1

38.889

93.188

0.362