Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   INQ48_RS25985 Genome accession   NZ_CP063166
Coordinates   5554291..5555526 (+) Length   411 a.a.
NCBI ID   WP_203202657.1    Uniprot ID   -
Organism   Variovorax paradoxus strain VAI-C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5549291..5560526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ48_RS25955 (INQ48_25935) cgtA 5549374..5550450 (-) 1077 WP_203202654.1 Obg family GTPase CgtA -
  INQ48_RS25960 (INQ48_25940) rpmA 5550522..5550782 (-) 261 WP_057592096.1 50S ribosomal protein L27 -
  INQ48_RS25965 (INQ48_25945) rplU 5550795..5551106 (-) 312 WP_057592097.1 50S ribosomal protein L21 -
  INQ48_RS25970 (INQ48_25950) - 5551292..5552284 (+) 993 WP_203202655.1 polyprenyl synthetase family protein -
  INQ48_RS25980 (INQ48_25960) pilB 5552527..5554260 (+) 1734 WP_203202656.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INQ48_RS25985 (INQ48_25965) pilC 5554291..5555526 (+) 1236 WP_203202657.1 type II secretion system F family protein Machinery gene
  INQ48_RS25990 (INQ48_25970) - 5555526..5556491 (+) 966 WP_203202658.1 A24 family peptidase -
  INQ48_RS25995 (INQ48_25975) coaE 5556508..5557116 (+) 609 WP_203202659.1 dephospho-CoA kinase -
  INQ48_RS26000 (INQ48_25980) - 5557191..5558681 (+) 1491 WP_203202660.1 MBOAT family protein -
  INQ48_RS26005 (INQ48_25985) - 5558683..5559696 (+) 1014 WP_203202661.1 hypothetical protein -
  INQ48_RS26010 (INQ48_25990) zapD 5559731..5560486 (+) 756 WP_203202662.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45050.69 Da        Isoelectric Point: 9.7956

>NTDB_id=493685 INQ48_RS25985 WP_203202657.1 5554291..5555526(+) (pilC) [Variovorax paradoxus strain VAI-C]
MATAASTANRQRRDVKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRTRSGKSIKPKDIAIFTRQ
LATMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLA
TYMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAVSEFFVAYWWLIFGVIGG
GLYFFFQAWKRNERVQRVMDRLLLRIPIFGALIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQ
EVSTGTSLTNAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSM
YLPIFKLGQVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=493685 INQ48_RS25985 WP_203202657.1 5554291..5555526(+) (pilC) [Variovorax paradoxus strain VAI-C]
ATGGCCACAGCAGCATCGACGGCAAACCGGCAGCGGCGCGACGTCAAGGAATTCGTCTTCGAGTGGGAAGGCAAGGATCG
CAACGGCAAGCTGGTGCGCGGTGAGCTGCGTGCCGCCGGCGAGAACCAGGTGCAGGCCGCGTTGCGGCGCCAGGGCGTGC
TCGCCAGCAAGATCAAGAAGCGCCGCACGCGCTCGGGCAAGAGCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAG
CTCGCCACCATGATGAAGGCCGGCGTGCCGCTTCTGCAGTCCTTCGACATCGTGGGCCGCGGCAACGCCAACCCCAGCGT
CGCCAAGTTGCTCAACGACATCCGCAGCGACGTCGAGACCGGCACCTCGCTGTCGTCGGCCTTCCGCAAGTTCCCGAAGT
ACTTCGACAACCTCTACTGCAACCTGGTCGAGGCCGGCGAAGCGGCCGGTATCCTCGAAGAACTGCTCGACCGCCTGGCC
ACCTACATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTACCCGACCTCGGTGGTCGTGGTGGC
CTTCGTGGTGGTGGCGATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCACCTCCTTCGGCGCCGACCTGC
CCGCCCCCACGCTGTTCGTGATGGCGGTCAGCGAGTTCTTCGTGGCCTACTGGTGGCTGATCTTCGGCGTGATCGGTGGC
GGCCTCTACTTCTTCTTCCAGGCCTGGAAGCGCAACGAGCGCGTGCAGCGCGTCATGGACCGCCTGCTGCTGCGGATACC
GATCTTCGGCGCGCTGATCGAGAAGTCCTGCGTCGCGCGCTGGACGCGCACGCTGGCCACCATGTTCGCCGCAGGCGTGC
CGCTGGTCGAAGCGCTCGACTCGGTGGGCGGCGCCTCGGGCAACACCGTGTACGGCGACGCCACGGCCAAGATCCAGCAG
GAGGTGTCGACGGGCACCAGCCTCACGAACGCGATGACCAACGTCAACCTGTTCCCCTCGATGGTGATCCAGATGACCGC
GATCGGCGAGGAATCGGGCTCCATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAGTCCGAGGTCGACGACATGG
TCGCCGGCCTCTCGAGCCTGATGGAGCCGATCATCATCGTCTTCCTCGGCGTGATCATCGGCGGCATCGTGGTCTCGATG
TACCTGCCCATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.094

98.054

0.53
  pilG Neisseria gonorrhoeae MS11

52.273

96.35

0.504
  pilC Acinetobacter baylyi ADP1

51.759

96.837

0.501
  pilG Neisseria meningitidis 44/76-A

52.02

96.35

0.501
  pilC Legionella pneumophila strain ERS1305867

49.749

96.837

0.482
  pilC Acinetobacter baumannii D1279779

49.874

96.594

0.482
  pilC Vibrio cholerae strain A1552

41.25

97.324

0.401
  pilC Thermus thermophilus HB27

38.995

100

0.397
  pilC Vibrio campbellii strain DS40M4

39.303

97.81

0.384