Detailed information NTG0049350

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: SPNINV200_RS10040
• Genome accession: NC_017593
• Coordinates: 1887193..1887597 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588002.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae INV200
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1882193..1892597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPNINV200_RS10000 (SPNINV200_18560)	rnpA	1882615..1882986 (-)	372	WP_000739246.1	ribonuclease P protein component	-
SPNINV200_RS10005 (SPNINV200_18570)	-	1883134..1884324 (-)	1191	WP_000167755.1	acetate kinase	-
SPNINV200_RS10010 (SPNINV200_18580)	comYH	1884375..1885328 (-)	954	WP_000345084.1	class I SAM-dependent methyltransferase	Machinery gene
SPNINV200_RS12560 (SPNINV200_18590)	-	1885389..1885976 (-)	588	Protein_1863	class I SAM-dependent methyltransferase	-
SPNINV200_RS10025 (SPNINV200_18600)	comGG/cglG	1886113..1886526 (-)	414	WP_000265617.1	competence type IV pilus minor pilin ComGG	Machinery gene
SPNINV200_RS10030 (SPNINV200_18610)	comGF/cglF	1886504..1886965 (-)	462	WP_000250529.1	competence type IV pilus minor pilin ComGF	Machinery gene
SPNINV200_RS10035 (SPNINV200_18620)	comGE/cglE	1886928..1887230 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
SPNINV200_RS10040 (SPNINV200_18630)	comGD/cglD	1887193..1887597 (-)	405	WP_000588002.1	competence type IV pilus minor pilin ComGD	Machinery gene
SPNINV200_RS10045 (SPNINV200_18640)	comGC/cglC	1887590..1887916 (-)	327	WP_000738623.1	comG operon protein ComGC	Machinery gene
SPNINV200_RS10050 (SPNINV200_18650)	comGB/cglB	1887918..1888934 (-)	1017	WP_077141332.1	competence type IV pilus assembly protein ComGB	Machinery gene
SPNINV200_RS10055 (SPNINV200_18660)	comGA/cglA/cilD	1888882..1889823 (-)	942	WP_000249550.1	competence type IV pilus ATPase ComGA	Machinery gene
SPNINV200_RS10060 (SPNINV200_18670)	-	1889899..1890264 (-)	366	WP_000286415.1	DUF1033 family protein	-
SPNINV200_RS10065 (SPNINV200_18680)	-	1890415..1891473 (-)	1059	WP_000649468.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14667.82 Da
• Isoelectric Point: 10.2164

>NTDB_id=49350 SPNINV200_RS10040 WP_000588002.1 1887193..1887597(-) (comGD/cglD) [Streptococcus pneumoniae INV200]
MIKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTNLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=49350 SPNINV200_RS10040 WP_000588002.1 1887193..1887597(-) (comGD/cglD) [Streptococcus pneumoniae INV200]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGCTTTGAGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAATCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	96.269	100	0.963
comGD/cglD	Streptococcus pneumoniae Rx1	95.522	100	0.955
comGD/cglD	Streptococcus pneumoniae D39	95.522	100	0.955
comGD/cglD	Streptococcus pneumoniae R6	95.522	100	0.955
comGD/cglD	Streptococcus mitis NCTC 12261	95.489	99.254	0.948
comGD/cglD	Streptococcus mitis SK321	94.776	100	0.948
comYD	Streptococcus gordonii str. Challis substr. CH1	57.48	94.776	0.545
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47