Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   SPNINV200_RS10050 Genome accession   NC_017593
Coordinates   1887918..1888934 (-) Length   338 a.a.
NCBI ID   WP_077141332.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV200     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1882918..1893934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNINV200_RS10005 (SPNINV200_18570) - 1883134..1884324 (-) 1191 WP_000167755.1 acetate kinase -
  SPNINV200_RS10010 (SPNINV200_18580) comYH 1884375..1885328 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  SPNINV200_RS12560 (SPNINV200_18590) - 1885389..1885976 (-) 588 Protein_1863 class I SAM-dependent methyltransferase -
  SPNINV200_RS10025 (SPNINV200_18600) comGG/cglG 1886113..1886526 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPNINV200_RS10030 (SPNINV200_18610) comGF/cglF 1886504..1886965 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPNINV200_RS10035 (SPNINV200_18620) comGE/cglE 1886928..1887230 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPNINV200_RS10040 (SPNINV200_18630) comGD/cglD 1887193..1887597 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPNINV200_RS10045 (SPNINV200_18640) comGC/cglC 1887590..1887916 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  SPNINV200_RS10050 (SPNINV200_18650) comGB/cglB 1887918..1888934 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPNINV200_RS10055 (SPNINV200_18660) comGA/cglA/cilD 1888882..1889823 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  SPNINV200_RS10060 (SPNINV200_18670) - 1889899..1890264 (-) 366 WP_000286415.1 DUF1033 family protein -
  SPNINV200_RS10065 (SPNINV200_18680) - 1890415..1891473 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  SPNINV200_RS10070 (SPNINV200_18690) nagA 1891636..1892787 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38466.48 Da        Isoelectric Point: 9.6162

>NTDB_id=49352 SPNINV200_RS10050 WP_077141332.1 1887918..1888934(-) (comGB/cglB) [Streptococcus pneumoniae INV200]
MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVTQMRTGLSQGKSFSEMMESLGCSSTI
VTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATYPLILLGFLLLIMLGLRNYLLPQLDSSNIATRIIGNLPQIF
LGMVGLVSVLALLALTFYKRSSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEI
GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLVFIFVALIIV
LLYAAMLMPMYQNMEVNF

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=49352 SPNINV200_RS10050 WP_077141332.1 1887918..1888934(-) (comGB/cglB) [Streptococcus pneumoniae INV200]
ATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAAGCAAAAAAATATCATCACCCTATTTAA
CAATCTCTTTTCTAGCGGTTTTCATCTGGTGGAGACCATCTCCTTTTTAGATAGGAGTGCTTTGTTGGACAAGCAGTGTG
TGACCCAGATGCGTACAGGCTTGTCTCAGGGGAAATCATTCTCAGAAATGATGGAAAGTTTGGGATGTTCAAGTACCATT
GTCACTCAGTTATCTCTAGCTGAAGTTCATGGCAATCTTCACCTGAGTTTGGGAAAGATAGAAGAATATCTAGACAATCT
GGCCAAGGTCAAGAAAAAGTTAATTGAAGTAGCGACCTATCCTTTGATTTTGCTGGGTTTTCTTCTCTTAATTATGCTGG
GGCTACGGAATTACCTGCTCCCACAACTGGATAGTAGCAATATTGCCACCCGAATTATCGGTAATCTGCCACAAATTTTT
CTAGGCATGGTAGGGCTTGTTTCCGTGCTTGCCCTTTTAGCACTAACTTTTTATAAAAGAAGTTCTAAGATGAGTGTCTT
TTCTATCTTAGCACGCCTTCCCTTTATTGGAATCTTTGTGCAGACCTACTTGACAGCCTATTATGCACGTGAATGGGGGA
ATATGATTTCACAGGGAATGGAGCTGACGCAGATTTTTCAAATGATGCAGGAACAAGGTTCCCAGCTCTTTAAAGAAATC
GGTCAAGATCTGGCTCAAACCCTGAAAAATGGCCGTGAATTTTCTCAGACGATAGGAACCTATCCTTTCTTTAGGAAGGA
ATTGAGTCTTATCATAGAGTATGGGGAAGTTAAGTCCAAGCTGGGTAGTGAGTTGGAAATCTATGCTGAAAAAACTTGGG
AAGCCTTTTTTACCCGAGTCAACCGCACCATGAATTTGGTGCAGCCACTGGTTTTTATCTTTGTGGCACTGATTATCGTT
TTACTTTATGCGGCAATGCTCATGCCCATGTATCAAAATATGGAGGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus pneumoniae Rx1

98.817

100

0.988
  comGB/cglB Streptococcus pneumoniae D39

98.817

100

0.988
  comGB/cglB Streptococcus pneumoniae R6

98.817

100

0.988
  comGB/cglB Streptococcus pneumoniae TIGR4

98.817

100

0.988
  comGB/cglB Streptococcus mitis SK321

95.266

100

0.953
  comGB/cglB Streptococcus mitis NCTC 12261

94.379

100

0.944
  comYB Streptococcus gordonii str. Challis substr. CH1

70.833

99.408

0.704
  comYB Streptococcus mutans UA140

58.176

94.083

0.547
  comYB Streptococcus mutans UA159

58.176

94.083

0.547
  comGB Lactococcus lactis subsp. cremoris KW2

50.898

98.817

0.503

Multiple sequence alignment