Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SPNINV200_RS10010 Genome accession   NC_017593
Coordinates   1884375..1885328 (-) Length   317 a.a.
NCBI ID   WP_000345084.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV200     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879375..1890328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNINV200_RS09985 (SPNINV200_18530) - 1880137..1880760 (-) 624 WP_000932661.1 hypothetical protein -
  SPNINV200_RS09990 (SPNINV200_18540) jag 1880811..1881797 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  SPNINV200_RS09995 (SPNINV200_18550) - 1881816..1882640 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  SPNINV200_RS10000 (SPNINV200_18560) rnpA 1882615..1882986 (-) 372 WP_000739246.1 ribonuclease P protein component -
  SPNINV200_RS10005 (SPNINV200_18570) - 1883134..1884324 (-) 1191 WP_000167755.1 acetate kinase -
  SPNINV200_RS10010 (SPNINV200_18580) comYH 1884375..1885328 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  SPNINV200_RS12560 (SPNINV200_18590) - 1885389..1885976 (-) 588 Protein_1863 class I SAM-dependent methyltransferase -
  SPNINV200_RS10025 (SPNINV200_18600) comGG/cglG 1886113..1886526 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPNINV200_RS10030 (SPNINV200_18610) comGF/cglF 1886504..1886965 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPNINV200_RS10035 (SPNINV200_18620) comGE/cglE 1886928..1887230 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPNINV200_RS10040 (SPNINV200_18630) comGD/cglD 1887193..1887597 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPNINV200_RS10045 (SPNINV200_18640) comGC/cglC 1887590..1887916 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  SPNINV200_RS10050 (SPNINV200_18650) comGB/cglB 1887918..1888934 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPNINV200_RS10055 (SPNINV200_18660) comGA/cglA/cilD 1888882..1889823 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  SPNINV200_RS10060 (SPNINV200_18670) - 1889899..1890264 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2270

>NTDB_id=49346 SPNINV200_RS10010 WP_000345084.1 1884375..1885328(-) (comYH) [Streptococcus pneumoniae INV200]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTGPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=49346 SPNINV200_RS10010 WP_000345084.1 1884375..1885328(-) (comYH) [Streptococcus pneumoniae INV200]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCTCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCGGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment