Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J5O00_RS05570 Genome accession   NZ_CP074415
Coordinates   1139683..1139967 (+) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 64     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1134683..1144967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS05560 - 1137201..1137473 (+) 273 WP_005382341.1 HU family DNA-binding protein -
  J5O00_RS05565 ppiD 1137673..1139532 (+) 1860 WP_005482527.1 peptidylprolyl isomerase -
  J5O00_RS05570 comEA 1139683..1139967 (+) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  J5O00_RS05575 rrtA 1140058..1140609 (-) 552 WP_005482515.1 rhombosortase -
  J5O00_RS05580 - 1140613..1141227 (+) 615 WP_005482520.1 DTW domain-containing protein -
  J5O00_RS05585 - 1141237..1142571 (-) 1335 WP_041954079.1 anti-phage deoxyguanosine triphosphatase -
  J5O00_RS05590 yfbR 1142584..1143168 (-) 585 WP_005482513.1 5'-deoxynucleotidase -
  J5O00_RS05595 - 1143260..1144474 (-) 1215 WP_005456922.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=491377 J5O00_RS05570 WP_021449594.1 1139683..1139967(+) (comEA) [Vibrio parahaemolyticus strain 64]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=491377 J5O00_RS05570 WP_021449594.1 1139683..1139967(+) (comEA) [Vibrio parahaemolyticus strain 64]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362