Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J5O00_RS01015 Genome accession   NZ_CP074415
Coordinates   198770..199882 (+) Length   370 a.a.
NCBI ID   WP_029804724.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 64     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 193770..204882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS00995 rsmB 194690..195973 (-) 1284 WP_029804726.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J5O00_RS01000 fmt 196054..197001 (-) 948 WP_029804725.1 methionyl-tRNA formyltransferase -
  J5O00_RS01005 def 197035..197553 (-) 519 WP_005461416.1 peptide deformylase -
  J5O00_RS01010 - 197692..198786 (+) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  J5O00_RS01015 dprA 198770..199882 (+) 1113 WP_029804724.1 DNA-processing protein DprA Machinery gene
  J5O00_RS01020 - 199885..200364 (+) 480 WP_005461440.1 DUF494 family protein -
  J5O00_RS01025 - 200443..201012 (+) 570 WP_025442383.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J5O00_RS01030 - 201082..202209 (-) 1128 WP_029806386.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J5O00_RS01035 purE 202214..202699 (-) 486 WP_005497410.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J5O00_RS01040 - 202899..203456 (+) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  J5O00_RS01045 hemF 203504..204421 (+) 918 WP_029806385.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39948.62 Da        Isoelectric Point: 6.6607

>NTDB_id=491353 J5O00_RS01015 WP_029804724.1 198770..199882(+) (dprA) [Vibrio parahaemolyticus strain 64]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLARRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=491353 J5O00_RS01015 WP_029804724.1 198770..199882(+) (dprA) [Vibrio parahaemolyticus strain 64]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGTTTAGCGCGGCGAGTAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (WHD_DprA)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

58.919

100

0.589
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.875

100

0.411
  dprA Neisseria meningitidis MC58

38.875

100

0.411
  dprA Neisseria gonorrhoeae MS11

36.761

100

0.386
  dprA Neisseria gonorrhoeae strain FA1090

36.504

100

0.384