Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KGS77_RS24015 Genome accession   NZ_CP074380
Coordinates   5504944..5505597 (+) Length   217 a.a.
NCBI ID   WP_242587652.1    Uniprot ID   -
Organism   Streptomyces sp. MST-110588     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5499944..5510597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS77_RS23985 (KGS77_23825) - 5500050..5500790 (+) 741 WP_242587650.1 ABC transporter ATP-binding protein -
  KGS77_RS23990 (KGS77_23830) - 5501188..5501382 (+) 195 WP_242585051.1 hypothetical protein -
  KGS77_RS24005 (KGS77_23845) tig 5502570..5503976 (+) 1407 WP_242585052.1 trigger factor -
  KGS77_RS24010 (KGS77_23850) clpP 5504271..5504876 (+) 606 WP_242587651.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KGS77_RS24015 (KGS77_23855) clpP 5504944..5505597 (+) 654 WP_242587652.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KGS77_RS24020 (KGS77_23860) clpX 5505783..5507075 (+) 1293 WP_242585053.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  KGS77_RS24025 (KGS77_23865) - 5507240..5507926 (-) 687 WP_242585054.1 hypothetical protein -
  KGS77_RS24030 (KGS77_23870) - 5508226..5508888 (-) 663 WP_347404525.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23837.06 Da        Isoelectric Point: 4.5425

>NTDB_id=491107 KGS77_RS24015 WP_242587652.1 5504944..5505597(+) (clpP) [Streptomyces sp. MST-110588]
MNNFSASGLYEGPTAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISIY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANE
ILRMRAQLEELLAKHSSTPIEKIREDIERDKILTAEESLAYGLVDQIVSTRKTSVSA

Nucleotide


Download         Length: 654 bp        

>NTDB_id=491107 KGS77_RS24015 WP_242587652.1 5504944..5505597(+) (clpP) [Streptomyces sp. MST-110588]
ATGAACAACTTCTCCGCGAGCGGCCTGTACGAGGGCCCGACCGCCGAGTCCCGCTACATCGTGCCGCGCTTCGTCGAGCG
CACCTCCCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAAGAGCGCGTGATCTTCCTCGGCGTGCAGATCG
ACGACGCCTCGGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCCGACCGCGACATCTCGATCTAC
ATCAACTCGCCGGGCGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTTCGTCAAGCCGGACATCCAGAC
GGTGTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTGCTGCTCGCCGCCGGCACGCCCGGCAAGCGGATGGCGCTGCCCA
ACGCGCGGGTACTGATCCACCAGCCGTACAGCGAGACCGGCCGGGGCCAGGTGTCCGACCTGGAGATCGCCGCGAACGAG
ATCCTGCGGATGCGGGCGCAGCTTGAGGAACTGCTGGCCAAGCACTCCTCGACGCCGATCGAGAAGATCCGCGAGGACAT
CGAGCGCGACAAGATCCTCACCGCGGAGGAGTCCCTGGCGTACGGTCTGGTCGACCAGATCGTCTCGACGCGGAAGACCT
CCGTCTCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

87.558

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

87.097

0.419
  clpP Streptococcus thermophilus LMD-9

45.361

89.401

0.406
  clpP Streptococcus pyogenes JRS4

45.361

89.401

0.406
  clpP Streptococcus pyogenes MGAS315

45.361

89.401

0.406
  clpP Streptococcus mutans UA159

45.361

89.401

0.406
  clpP Streptococcus thermophilus LMG 18311

45.361

89.401

0.406
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

88.018

0.401
  clpP Streptococcus pneumoniae Rx1

44.56

88.94

0.396
  clpP Streptococcus pneumoniae D39

44.56

88.94

0.396
  clpP Streptococcus pneumoniae R6

44.56

88.94

0.396
  clpP Streptococcus pneumoniae TIGR4

44.56

88.94

0.396
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

88.018

0.392