Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KGS77_RS24010 Genome accession   NZ_CP074380
Coordinates   5504271..5504876 (+) Length   201 a.a.
NCBI ID   WP_242587651.1    Uniprot ID   -
Organism   Streptomyces sp. MST-110588     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5499271..5509876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS77_RS23985 (KGS77_23825) - 5500050..5500790 (+) 741 WP_242587650.1 ABC transporter ATP-binding protein -
  KGS77_RS23990 (KGS77_23830) - 5501188..5501382 (+) 195 WP_242585051.1 hypothetical protein -
  KGS77_RS24005 (KGS77_23845) tig 5502570..5503976 (+) 1407 WP_242585052.1 trigger factor -
  KGS77_RS24010 (KGS77_23850) clpP 5504271..5504876 (+) 606 WP_242587651.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KGS77_RS24015 (KGS77_23855) clpP 5504944..5505597 (+) 654 WP_242587652.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KGS77_RS24020 (KGS77_23860) clpX 5505783..5507075 (+) 1293 WP_242585053.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  KGS77_RS24025 (KGS77_23865) - 5507240..5507926 (-) 687 WP_242585054.1 hypothetical protein -
  KGS77_RS24030 (KGS77_23870) - 5508226..5508888 (-) 663 WP_347404525.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21282.11 Da        Isoelectric Point: 4.6747

>NTDB_id=491106 KGS77_RS24010 WP_242587651.1 5504271..5504876(+) (clpP) [Streptomyces sp. MST-110588]
MPSAAAEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSVNAGLAIYDTMQYI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNTEILMHQPSAGLAGSATDIKIHAERLLHTKRRMAELTAQHTGQTVEQ
ITRDSDRDRWFDPQEAKEYGLIDDVMTTAGGVPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=491106 KGS77_RS24010 WP_242587651.1 5504271..5504876(+) (clpP) [Streptomyces sp. MST-110588]
ATGCCTTCCGCCGCCGCCGAGCCGTCCATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT
CTTCCTCGGCCAAGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGTTGCTCCTCCTGGCCGCCGACCCGGACA
AGGACATCTTCCTCTACATCAACAGCCCCGGTGGATCGGTCAACGCCGGCCTGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACCATCGCCATGGGCCTGGCGGCCTCCATGGGCCAGTTCCTGCTGAGCGCCGGCACCCCGGGCAA
GCGCTTCGCGCTGCCGAACACCGAGATCCTGATGCACCAGCCGTCCGCCGGTCTGGCCGGCTCCGCCACGGACATCAAGA
TCCACGCCGAGCGCCTGCTGCACACCAAGCGCCGGATGGCCGAGCTCACCGCCCAGCACACCGGCCAGACCGTCGAGCAG
ATCACCCGCGACTCCGACCGCGACCGTTGGTTCGACCCGCAGGAGGCCAAGGAGTACGGCCTCATCGACGACGTCATGAC
CACCGCCGGAGGCGTTCCGGGCGGGGGCGGCACCGGGGCGGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.723

93.532

0.502
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.406

93.035

0.488
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

94.03

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

94.03

0.478
  clpP Streptococcus thermophilus LMD-9

49.215

95.025

0.468
  clpP Streptococcus thermophilus LMG 18311

49.215

95.025

0.468
  clpP Streptococcus mutans UA159

49.735

94.03

0.468
  clpP Streptococcus pyogenes JRS4

49.735

94.03

0.468
  clpP Streptococcus pyogenes MGAS315

49.735

94.03

0.468
  clpP Streptococcus pneumoniae Rx1

48.677

94.03

0.458
  clpP Streptococcus pneumoniae D39

48.677

94.03

0.458
  clpP Streptococcus pneumoniae R6

48.677

94.03

0.458
  clpP Streptococcus pneumoniae TIGR4

48.677

94.03

0.458