Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SBAL175_RS02490 Genome accession   NC_017571
Coordinates   548866..550137 (-) Length   423 a.a.
NCBI ID   WP_006083351.1    Uniprot ID   -
Organism   Shewanella baltica BA175     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543866..555137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBAL175_RS02460 (Sbal175_0480) - 544681..545217 (-) 537 WP_006083357.1 thioredoxin family protein -
  SBAL175_RS02465 (Sbal175_0481) mutT 545762..546154 (-) 393 WP_006083356.1 8-oxo-dGTP diphosphatase MutT -
  SBAL175_RS02470 (Sbal175_0482) yacG 546231..546440 (-) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  SBAL175_RS02475 (Sbal175_0483) zapD 546514..547248 (-) 735 WP_006083354.1 cell division protein ZapD -
  SBAL175_RS02480 (Sbal175_0484) coaE 547241..547858 (-) 618 WP_006083353.1 dephospho-CoA kinase -
  SBAL175_RS02485 (Sbal175_0485) pilD 547898..548824 (-) 927 WP_006083352.1 A24 family peptidase Machinery gene
  SBAL175_RS02490 (Sbal175_0486) pilC 548866..550137 (-) 1272 WP_006083351.1 type II secretion system F family protein Machinery gene
  SBAL175_RS02495 (Sbal175_0487) pilB 550291..552003 (-) 1713 WP_006083350.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SBAL175_RS02500 (Sbal175_0488) - 552090..552467 (-) 378 WP_006083349.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SBAL175_RS02505 (Sbal175_0489) nadC 553177..554058 (-) 882 WP_006083348.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46089.23 Da        Isoelectric Point: 10.1188

>NTDB_id=48818 SBAL175_RS02490 WP_006083351.1 548866..550137(-) (pilC) [Shewanella baltica BA175]
MATATTTRKPRTKKAEQKSQPKIYTFEWKGLNRDGKKTAGELRGASAAEIRSQLKSQGVNPKSVRKQSSPLFKLGDASIT
PMDIAMMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLANILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVAILVTTLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQILRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGNIVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=48818 SBAL175_RS02490 WP_006083351.1 548866..550137(-) (pilC) [Shewanella baltica BA175]
ATGGCTACGGCAACGACCACAAGAAAGCCTCGCACCAAGAAAGCCGAGCAAAAGAGCCAACCCAAAATCTATACCTTTGA
ATGGAAAGGCCTAAATCGCGACGGTAAGAAAACTGCGGGAGAACTCAGAGGTGCTTCTGCCGCCGAAATCCGTAGTCAAT
TAAAATCCCAAGGAGTTAACCCTAAGAGCGTTCGTAAGCAATCTTCTCCGCTCTTTAAGCTAGGTGATGCCAGTATTACC
CCTATGGATATTGCTATGATGACTCGCCAAATCGCGACTATGCTAGCGGCGGGCGTACCTTTAGTCACCACAATTGAACT
ACTCGGCCGCGGTCACGAAAAAGCTAAGATGCGTGAATTACTTGCAAATATTCTCAGCGAAATTCAATCAGGCATTCCCT
TATCCGATGCGATGCGCCCTCATAGGCGTTACTTCGATGAGCTATATGTTGACCTAGTTGCAGCAGGTGAACATTCTGGT
TCACTAGACTTGGTCTTCGATCGTGTTGCTACTTATAGAGAAAAAACGGAAGCACTCAAATCAAAAATTAAGAAGGCCAT
GTTCTATCCCGCCGCTGTTGTCATCGTCGCGATATTAGTAACAACCTTATTATTACTCTTTGTCGTCCCACAGTTTGAAG
ACATCTTCAAAGGCTTTGGGGCTGAACTGCCCGCCTTTACCCAACTGGTGCTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCTGCCATTGTAGGCGGAGTATTTTTATTCGTTCGAGCCCACAGAAACTCCCAAATTTTACGTGA
TAGAGTCGATGAAGCGGTACTTAAAATCCCAGCCATTGGGCCGATTTTACACAAAGGAGCCATGGCTCGATTCGCCCGGA
CTTTAGCGACTACCTTCGCCGCGGGTGTGCCACTCATTGATGGCTTAGAATCCGCAGCTGGCGCATCGGGTAACGCGGTA
TACCGCAAAGCTATTTTAAAAATTCGTCAAGAAGTCATGGCGGGGATGCAGATGAATGTGGCGATGCAGACCACAGGACT
TTTCCCCGATATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCCGGCTCACTGGATAACATGCTCAATAAAGTCTCAA
CCATTTACGAAATGCAAGTAGATGATGCGGTTGATGGCTTATCAAGCCTGATAGAACCGATTATGATGGTGGTCATCGGC
ACTGTCGTCGGCGGTTTAATCGTTGCTATGTATTTACCTATATTCCAAATGGGTAATATTGTAGGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

49.257

95.508

0.47
  pilC Acinetobacter baumannii D1279779

49.246

94.09

0.463
  pilC Acinetobacter baylyi ADP1

48.615

93.853

0.456
  pilC Vibrio cholerae strain A1552

47.368

94.326

0.447
  pilC Vibrio campbellii strain DS40M4

44.01

96.69

0.426
  pilG Neisseria meningitidis 44/76-A

41.542

95.035

0.395
  pilG Neisseria gonorrhoeae MS11

41.542

95.035

0.395

Multiple sequence alignment