Detailed information NTG0048817

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SBAL175_RS02485
• Genome accession: NC_017571
• Coordinates: 547898..548824 (-)
• Length: 308 a.a.
• NCBI ID: WP_006083352.1
• Uniprot ID: -
• Organism: Shewanella baltica BA175
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 542898..553824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SBAL175_RS02455 (Sbal175_0479)	-	543690..544616 (+)	927	WP_006083358.1	exopolyphosphatase	-
SBAL175_RS02460 (Sbal175_0480)	-	544681..545217 (-)	537	WP_006083357.1	thioredoxin family protein	-
SBAL175_RS02465 (Sbal175_0481)	mutT	545762..546154 (-)	393	WP_006083356.1	8-oxo-dGTP diphosphatase MutT	-
SBAL175_RS02470 (Sbal175_0482)	yacG	546231..546440 (-)	210	WP_006083355.1	DNA gyrase inhibitor YacG	-
SBAL175_RS02475 (Sbal175_0483)	zapD	546514..547248 (-)	735	WP_006083354.1	cell division protein ZapD	-
SBAL175_RS02480 (Sbal175_0484)	coaE	547241..547858 (-)	618	WP_006083353.1	dephospho-CoA kinase	-
SBAL175_RS02485 (Sbal175_0485)	pilD	547898..548824 (-)	927	WP_006083352.1	A24 family peptidase	Machinery gene
SBAL175_RS02490 (Sbal175_0486)	pilC	548866..550137 (-)	1272	WP_006083351.1	type II secretion system F family protein	Machinery gene
SBAL175_RS02495 (Sbal175_0487)	pilB	550291..552003 (-)	1713	WP_006083350.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SBAL175_RS02500 (Sbal175_0488)	-	552090..552467 (-)	378	WP_006083349.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34258.76 Da
• Isoelectric Point: 7.7068

>NTDB_id=48817 SBAL175_RS02485 WP_006083352.1 547898..548824(-) (pilD) [Shewanella baltica BA175]
MSEFISILGQSLNQSPWLFIALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVKKIGVDSLNKPIDAF
PEKYNLVVPGSACPKCKTAIKPWHNLPVLGWLMLKGKCAACHTPISARYPIIEFITGLLIATLAWHFGPSWPFVFASILT
FVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIVGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=48817 SBAL175_RS02485 WP_006083352.1 547898..548824(-) (pilD) [Shewanella baltica BA175]
ATGTCAGAATTTATCTCCATTTTGGGCCAGTCTCTAAACCAGAGTCCTTGGCTCTTTATTGCTTTAAGCTTTATTTTTGC
CGCTACCATTGGTAGTTTTTTAAACGTGGTGATCCACAGATTTCCTGTGATGATGAAACGGGAGTGGCAGCAAGAATGCA
ATCAGTATTTGCAGGAATACCACGAAGACATAGTCAAAAAAATAGGTGTAGATAGTCTCAATAAACCTATTGATGCCTTC
CCTGAAAAATATAATCTTGTTGTTCCGGGCTCAGCCTGCCCTAAGTGCAAAACGGCGATTAAACCTTGGCATAATTTACC
CGTATTAGGCTGGTTAATGCTCAAGGGGAAATGCGCCGCCTGTCACACCCCTATTTCAGCCCGCTACCCTATTATTGAAT
TCATAACAGGGCTACTTATCGCGACTTTAGCTTGGCATTTTGGTCCAAGCTGGCCGTTTGTTTTTGCGAGCATACTCACC
TTTGTGCTTGTAGCACTGACGGGTATCGATCTTGATGAGATGTTGCTCCCCGACCAAATGACGCTACCGTTACTTTGGCT
CGGCTTGATCATCAATCTAAATCATACATTTGCGAGCCCAACCGACGCCATTGTCGGTGCGGCGGCAGGCTATTTGAGTC
TATGGTCCATTTTCTGGTTGTTTAAAATCCTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTTAAATTGCTCGCCGTT
TTCGGCGCTTGGCTTGGCTGGCAAATGCTACCGCTGGTGATTTTACTTTCGTCCCTTGTTGGCGCAGTTGTTGGCATCAC
TATGATTGTTAGTAAACGCCTGAAACAAGGGAATCCAATCCCATTTGGCCCCTATATTGCCGCAGCTGGCTGGATAGCCT
TGCTATTTGGACAACAGATTGTCGATTGGTATCTATCAACACTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.342	96.753	0.497
pilD	Acinetobacter baumannii D1279779	47.386	99.351	0.471
pilD	Vibrio campbellii strain DS40M4	49.32	95.455	0.471
pilD	Acinetobacter nosocomialis M2	47.541	99.026	0.471
pilD	Neisseria gonorrhoeae MS11	44.33	94.481	0.419