Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ICA18_RS22390 Genome accession   NZ_CP062164
Coordinates   1386143..1386586 (+) Length   147 a.a.
NCBI ID   WP_104613412.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. corylina strain A7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1370694..1385248 1386143..1386586 flank 895


Gene organization within MGE regions


Location: 1370694..1386586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICA18_RS06050 (ICA18_06055) - 1370694..1371479 (+) 786 WP_104567471.1 hypothetical protein -
  ICA18_RS06055 (ICA18_06060) - 1371518..1372453 (+) 936 WP_104567470.1 hypothetical protein -
  ICA18_RS06060 (ICA18_06065) - 1372722..1373824 (+) 1103 WP_104567867.1 IS3 family transposase -
  ICA18_RS06065 (ICA18_06070) - 1374369..1374755 (+) 387 WP_026064907.1 hypothetical protein -
  ICA18_RS06070 (ICA18_06075) - 1374844..1375236 (+) 393 WP_023904915.1 H-NS family nucleoid-associated regulatory protein -
  ICA18_RS06075 (ICA18_06080) glgX 1375908..1378040 (-) 2133 WP_053051310.1 glycogen debranching protein GlgX -
  ICA18_RS06080 (ICA18_06085) rimK 1378531..1379436 (+) 906 WP_212583745.1 30S ribosomal protein S6--L-glutamate ligase -
  ICA18_RS06085 (ICA18_06090) - 1379663..1380022 (+) 360 WP_223571086.1 hypothetical protein -
  ICA18_RS06090 (ICA18_06095) - 1380123..1380800 (+) 678 WP_006448355.1 response regulator transcription factor -
  ICA18_RS06095 (ICA18_06100) - 1380793..1382127 (+) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  ICA18_RS06100 (ICA18_06105) - 1382230..1382385 (-) 156 Protein_1187 SymE family type I addiction module toxin -
  ICA18_RS06105 (ICA18_06110) coaE 1382485..1383108 (-) 624 WP_212583746.1 dephospho-CoA kinase -
  ICA18_RS06110 (ICA18_06115) - 1383122..1383985 (-) 864 WP_104612232.1 A24 family peptidase -
  ICA18_RS06115 (ICA18_06120) pilC 1383992..1385248 (-) 1257 WP_104613429.1 type II secretion system F family protein Machinery gene
  ICA18_RS06120 (ICA18_06125) - 1385595..1386035 (+) 441 WP_104613411.1 pilin -
  ICA18_RS22390 (ICA18_06130) pilA 1386143..1386586 (+) 444 WP_104613412.1 pilin Machinery gene

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 14862.01 Da        Isoelectric Point: 9.1484

>NTDB_id=486706 ICA18_RS22390 WP_104613412.1 1386143..1386586(+) (pilA) [Xanthomonas arboricola pv. corylina strain A7]
MRRINGFTLIELMMVVAIIAVLAAIAMPAYQDYAVRTRVSEALVLASGLKATVIVNASENSADLSRGASLVSSSDASANV
TSTSINPVNGVITVVTTVKAGNGSITLTPHGASGSALSAGTSPSGNVVWTCSSTIKQKYLPSTCSGT

Nucleotide


Download         Length: 444 bp        

>NTDB_id=486706 ICA18_RS22390 WP_104613412.1 1386143..1386586(+) (pilA) [Xanthomonas arboricola pv. corylina strain A7]
ATGAGGAGGATAAATGGATTCACCCTTATCGAGTTGATGATGGTTGTTGCAATAATTGCAGTGCTTGCCGCAATTGCTAT
GCCGGCTTATCAAGACTATGCTGTGCGTACGCGTGTGTCTGAAGCTTTAGTCTTGGCAAGCGGGTTAAAAGCTACTGTGA
TTGTCAATGCTTCGGAAAATTCAGCGGATTTGTCTCGAGGCGCGTCTCTTGTCTCAAGTTCTGATGCTTCCGCGAATGTT
ACGTCTACTTCAATTAATCCAGTGAATGGCGTTATTACGGTGGTGACTACGGTAAAAGCTGGCAATGGATCAATTACTTT
GACGCCTCACGGAGCTAGTGGTTCGGCTTTATCCGCAGGGACATCGCCCTCAGGTAATGTCGTGTGGACTTGTTCGTCGA
CAATTAAACAGAAGTATTTGCCATCGACGTGCTCGGGTACTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

43.636

100

0.49
  pilA2 Legionella pneumophila str. Paris

47.222

97.959

0.463
  pilA2 Legionella pneumophila strain ERS1305867

47.222

97.959

0.463
  comP Acinetobacter baylyi ADP1

41.772

100

0.449
  pilE Neisseria gonorrhoeae MS11

35.976

100

0.401
  pilA Pseudomonas aeruginosa PAK

34.969

100

0.388
  pilE Acinetobacter baumannii D1279779

40.441

92.517

0.374
  comF Acinetobacter baylyi ADP1

37.671

99.32

0.374
  pilA/pilA1 Eikenella corrodens VA1

33.75

100

0.367
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.552

98.639

0.361
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.552

98.639

0.361