Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   J8G07_RS15650 Genome accession   NZ_CP072612
Coordinates   3179484..3179933 (-) Length   149 a.a.
NCBI ID   WP_032874811.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174484..3184933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS15620 sepM 3174581..3175603 (-) 1023 WP_007611255.1 SepM family pheromone-processing serine protease Regulator
  J8G07_RS15625 - 3175609..3176388 (-) 780 WP_014304961.1 patatin family protein -
  J8G07_RS15630 ylbJ 3176568..3177794 (+) 1227 WP_032874813.1 sporulation integral membrane protein YlbJ -
  J8G07_RS15635 coaD 3177813..3178295 (-) 483 WP_014417707.1 pantetheine-phosphate adenylyltransferase -
  J8G07_RS15640 rsmD 3178300..3178854 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J8G07_RS15645 - 3179153..3179425 (-) 273 WP_014417705.1 YlbG family protein -
  J8G07_RS15650 ylbF 3179484..3179933 (-) 450 WP_032874811.1 YlbF family regulator Regulator
  J8G07_RS15655 - 3180004..3180243 (-) 240 WP_003154475.1 YlbE-like family protein -
  J8G07_RS15660 - 3180259..3180669 (-) 411 WP_025284691.1 YlbD family protein -
  J8G07_RS15665 - 3180834..3181874 (-) 1041 WP_032874809.1 CAP domain-containing protein -
  J8G07_RS15670 - 3181959..3182402 (-) 444 WP_014417702.1 CBS domain-containing protein -
  J8G07_RS15675 - 3182543..3182902 (+) 360 WP_007409688.1 YugN family protein -
  J8G07_RS15680 ctaG 3182937..3183821 (-) 885 WP_087920763.1 cytochrome c oxidase assembly factor CtaG -
  J8G07_RS15685 ctaF 3183846..3184178 (-) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  J8G07_RS15690 ctaE 3184181..3184804 (-) 624 WP_003154482.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16846.97 Da        Isoelectric Point: 4.9483

>NTDB_id=484423 J8G07_RS15650 WP_032874811.1 3179484..3179933(-) (ylbF) [Bacillus amyloliquefaciens strain G10]
MYATIESVKLQREAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=484423 J8G07_RS15650 WP_032874811.1 3179484..3179933(-) (ylbF) [Bacillus amyloliquefaciens strain G10]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGGGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.248

100

0.872