Detailed information NTG0484421

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: IEE84_RS00310
• Genome accession: NZ_CP061739
• Coordinates: 68561..69784 (-)
• Length: 407 a.a.
• NCBI ID: WP_191114490.1
• Uniprot ID: -
• Organism: Psychrobacter sp. 28M-43
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 63561..74784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IEE84_RS00290 (IEE84_00290)	-	65549..65884 (+)	336	WP_191114488.1	pyrimidine/purine nucleoside phosphorylase	-
IEE84_RS00295 (IEE84_00295)	rlmB	66108..66878 (+)	771	WP_102078746.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IEE84_RS00300 (IEE84_00300)	coaE	66841..67527 (-)	687	WP_191114489.1	dephospho-CoA kinase	-
IEE84_RS00305 (IEE84_00305)	pilD	67654..68553 (-)	900	WP_191115319.1	prepilin peptidase	Machinery gene
IEE84_RS00310 (IEE84_00310)	pilC	68561..69784 (-)	1224	WP_191114490.1	type II secretion system F family protein	Machinery gene
IEE84_RS00315 (IEE84_00315)	pilB	70005..71720 (-)	1716	WP_191114491.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IEE84_RS00320 (IEE84_00320)	tpiA	72105..72917 (+)	813	WP_191114492.1	triose-phosphate isomerase	-
IEE84_RS00325 (IEE84_00325)	secG	73132..73440 (+)	309	WP_191114493.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 44543.46 Da
• Isoelectric Point: 9.7724

>NTDB_id=484421 IEE84_RS00310 WP_191114490.1 68561..69784(-) (pilC) [Psychrobacter sp. 28M-43]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKAIKAIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRKHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVIVVAIIVTMILLIKVVPVFSDLFSSFGAELPAFTQMVVGMSEWMQAWWFILIIAIGGAIVGF
SEAKKRSKKFRDFLDRAVLKAPIFGNIAYQAIIARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQIKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide

• Length: 1224 bp

>NTDB_id=484421 IEE84_RS00310 WP_191114490.1 68561..69784(-) (pilC) [Psychrobacter sp. 28M-43]
ATGGCAAAAGCTAAGACCGATATGTTGTTAGATTTTGTTTACGATGGTGTAAACCGACGCGGGCAGAAAGTTAAGGGCGA
AACTACCAGTCGTAGCTTAGAGCTGGCAAAAGCGACCCTACGTAAACAAGGTATCACGGTTAAAGGGATTAAGAAAAAAC
CAAAACCACTTTATACCTTCAAAAAAGCCATTAAAGCCATTGATATTGCTATTTTTGCTCGGCAACTAGCAACAATGATG
AAAGCGGGCGTACCTTTAACCCAGTCTTTCGAAATTGTCGCCGACTCCCTCGATAATCCGAGTATGAAAGACTTAGTATT
GCAAATCAAAGCAGATATTGAAGCAGGTGGTACCTTTGCCTCTGCATTGCGCAAACATCCTCGTTACTTTGATGATTTAT
TCTGCTCCCTCGTCGAATCTGGTGAACAATCAGGTGCACTTGAGACGATGCTTGAACGAGTCGCTACTTACAAAGAAAAG
AGTGAGCTACTAAAAGCAAAAATCAAAAAAGCAATGAAGTATCCTATTGCCGTTATTGTGGTTGCTATCATTGTCACCAT
GATTCTGTTGATAAAAGTAGTACCTGTTTTCTCTGACTTATTTAGCTCATTTGGTGCAGAGCTACCAGCGTTTACGCAAA
TGGTTGTTGGTATGTCCGAATGGATGCAAGCATGGTGGTTTATCCTTATTATTGCTATCGGCGGTGCAATCGTTGGCTTC
TCAGAAGCTAAAAAACGATCTAAGAAATTCCGTGACTTTTTAGACCGTGCTGTACTTAAAGCTCCGATATTTGGCAACAT
TGCCTATCAAGCGATTATTGCACGCTTTTCTCGTACACTATCTACAACTTTTGCCGCTGGTGTGCCGCTTATCGATGCCC
TAGACTCTACTGCAGGTGCGACCAATAACGTTGTGTTCTACAATGCGACTCAACAGATCAAAAATGATGTATCTACTGGC
CAGCAATTACAGTTTTCCATACGCTCGACCAACTTATTCCCGAGCCTGGTCATTCAGATGGTTGGTATTGGCGAGGAGTC
TGGTAGCTTAGAAGAGATGCTAGATAAAGTCGCTGTCTACTATGAAAATGAAGTTGATAATGCGGTTGATGGTTTGACTA
GCTTGATGGAACCGTTAATTATGGCAGTATTAGGTGTATTAGTTGGTGGTCTAGTCATCGCAATGTACTTGCCTATCTTC
CAGATGGGCTCAGTAGTAGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-398)

• Type II secretion system (T2SS), protein F (T2SSF) (72-195)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baumannii D1279779	71.324	100	0.715
pilC	Acinetobacter baylyi ADP1	69.608	100	0.698
pilC	Pseudomonas stutzeri DSM 10701	64.304	97.052	0.624
pilC	Legionella pneumophila strain ERS1305867	57.143	98.034	0.56
pilC	Vibrio cholerae strain A1552	44.363	100	0.445
pilG	Neisseria gonorrhoeae MS11	44.192	97.297	0.43
pilG	Neisseria meningitidis 44/76-A	43.939	97.297	0.428
pilC	Vibrio campbellii strain DS40M4	41	98.28	0.403