Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC772_RS17190 Genome accession   NZ_CP061664
Coordinates   3714029..3715255 (+) Length   408 a.a.
NCBI ID   WP_191015938.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3709029..3720255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS17155 (IC772_17145) rimP 3709700..3710224 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  IC772_RS17175 (IC772_17165) secG 3710862..3711191 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  IC772_RS17180 (IC772_17170) tpiA 3711204..3711998 (-) 795 WP_191015935.1 triose-phosphate isomerase -
  IC772_RS17185 (IC772_17175) pilB 3712289..3714001 (+) 1713 WP_191015937.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC772_RS17190 (IC772_17180) pilC 3714029..3715255 (+) 1227 WP_191015938.1 type II secretion system F family protein Machinery gene
  IC772_RS19250 (IC772_17185) pilD 3715255..3716115 (+) 861 WP_191015940.1 prepilin peptidase Machinery gene
  IC772_RS17200 (IC772_17190) coaE 3716117..3716713 (+) 597 WP_191015941.1 dephospho-CoA kinase -
  IC772_RS17205 (IC772_17195) - 3716716..3717625 (-) 910 Protein_3390 DMT family transporter -
  IC772_RS17210 (IC772_17200) rlmB 3717661..3718410 (-) 750 WP_019456777.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC772_RS17215 (IC772_17205) - 3718513..3718839 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IC772_RS19285 - 3718916..3719350 (-) 435 Protein_3393 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44997.50 Da        Isoelectric Point: 9.9566

>NTDB_id=483942 IC772_RS17190 WP_191015938.1 3714029..3715255(+) (pilC) [Acinetobacter seifertii strain AS28]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAKLPAFTQMVVDISKWMQEYWFFMIIAIGIIIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483942 IC772_RS17190 WP_191015938.1 3714029..3715255(+) (pilC) [Acinetobacter seifertii strain AS28]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGGGA
ACTGCCAGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCGCTGGTACAAGGCTTTGAGATTGTCGCTGAAGGTTTGGAAAACCCAGCTATGCGTGAGGT
AGTACTTGGTATTAAAGGTGAAGTTGAAGGTGGCAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACATTTTGATA
ATTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGTGCGCTTGAAACTATGCTAGATCGTGTGGCGATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATATCCTGCAACGGTTATTGTGGTAGCGATTGTGGT
GACCATTATTTTGATGGTTAAAGTCGTACCCGTGTTTCAGGATCTATTTTCTTCTTTTGGAGCAAAGTTACCAGCCTTTA
CACAAATGGTCGTAGACATATCGAAATGGATGCAAGAATACTGGTTTTTTATGATTATCGCGATTGGTATAATAATTGCC
GCTTTTTTAGAAGCTAAAAAGCGTAGTAAAAAGTTTCGTGATGGCCTAGATAAACTGGCACTTAAATTACCTATTTTTGG
GGATTTGGTTTACAAGGCAATTATTGCCCGTTATAGCCGGACACTTGCCACAACATTTGCAGCAGGTGTTCCGCTCATTG
ATGCACTTGAGTCAACTGCTGGTGCAACCAACAATGTCATCTATGAGCAAGCCGTTATGAAAATTCGTGAAGATGTTGCT
ACAGGTCAGCAACTTCAGTTTGCCATGCGTGTATCTAACCGTTTTCCTTCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGGGCGCTAGACAGCATGCTCGATAAAGTTGCGACCTATTATGAAAATGAAGTGGATAATGCGGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCGGTTTTAGGGGTGTTGGTAGGCGGTCTAGTTGTTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.786

99.755

0.407