Detailed information NTG0483952

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IC772_RS19250
• Genome accession: NZ_CP061664
• Coordinates: 3715255..3716115 (+)
• Length: 286 a.a.
• NCBI ID: WP_191015940.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain AS28
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3710255..3721115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC772_RS17175 (IC772_17165)	secG	3710862..3711191 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
IC772_RS17180 (IC772_17170)	tpiA	3711204..3711998 (-)	795	WP_191015935.1	triose-phosphate isomerase	-
IC772_RS17185 (IC772_17175)	pilB	3712289..3714001 (+)	1713	WP_191015937.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IC772_RS17190 (IC772_17180)	pilC	3714029..3715255 (+)	1227	WP_191015938.1	type II secretion system F family protein	Machinery gene
IC772_RS19250 (IC772_17185)	pilD	3715255..3716115 (+)	861	WP_191015940.1	prepilin peptidase	Machinery gene
IC772_RS17200 (IC772_17190)	coaE	3716117..3716713 (+)	597	WP_191015941.1	dephospho-CoA kinase	-
IC772_RS17205 (IC772_17195)	-	3716716..3717625 (-)	910	Protein_3390	DMT family transporter	-
IC772_RS17210 (IC772_17200)	rlmB	3717661..3718410 (-)	750	WP_019456777.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC772_RS17215 (IC772_17205)	-	3718513..3718839 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC772_RS19285	-	3718916..3719350 (-)	435	Protein_3393	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32093.53 Da
• Isoelectric Point: 7.8340

>NTDB_id=483952 IC772_RS19250 WP_191015940.1 3715255..3716115(+) (pilD) [Acinetobacter seifertii strain AS28]
MQDIIAYFIQNLTALYVAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHGKLTLSKPASSCPKCHQS
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMVFGPTIQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=483952 IC772_RS19250 WP_191015940.1 3715255..3716115(+) (pilD) [Acinetobacter seifertii strain AS28]
ATGCAAGACATCATTGCTTATTTTATTCAAAACCTAACTGCACTTTATGTTGCGGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTGAATGTAGTGATTTATCGGACTCCTAAAATGATGGAGCAAGACTGGCAACAAGAATGTCAAATGCTCCTAA
ATCCAGAGCAACCCATTATTGACCATGGGAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAAGTGCCATCAATCG
ATTCGTTGGTATCAAAATATTCCTGTCATAAGCTGGCTTGTGCTAAGAGGAAAATGTGGTCATTGCCAACATCCTATCAG
CATTCGTTATCCAGTAATTGAATTACTCACCATGTTATGTTCATTGGTGGTGGTTATGGTGTTTGGCCCGACCATACAAA
TGCTTTGGGGACTCGTCCTAACTTGGGTTTTAATTGCCCTCACCTTTATAGACTTTGATACACAACTTTTACCTGATCGC
TTTACCCTGCCTTTGGCGGCACTTGGCTTGGGCATTAACACCTTTAATATTTACACCTCACCTAACTCAGCTATTTGGGG
TTATTTAATCGGCTTTTTATGTCTCTGGATTGTGTATTACTTATTTAAAGTGATTACAGGTAAAGAAGGTATGGGCTATG
GCGACTTTAAGTTACTTGCAGCATTGGGCGCATGGATGGGGCCATTGATGCTACCGTTAATTGTGTTATTGTCGTCTTTA
TTGGGTGCAATCATTGGCATCATCTTATTAAAGTTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	97.203	100	0.972
pilD	Acinetobacter baumannii D1279779	96.853	100	0.969
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	46.565	91.608	0.427