Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC776_RS01660 Genome accession   NZ_CP061646
Coordinates   350066..351292 (-) Length   408 a.a.
NCBI ID   WP_134262170.1    Uniprot ID   A0A5E9PSA4
Organism   Acinetobacter seifertii strain AS39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345066..356292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS01630 (IC776_01630) - 345969..346406 (+) 438 Protein_309 tetratricopeptide repeat protein -
  IC776_RS01635 (IC776_01635) - 346483..346809 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IC776_RS01640 (IC776_01640) rlmB 346912..347661 (+) 750 WP_039251214.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC776_RS01645 (IC776_01645) - 347697..348611 (+) 915 WP_049064242.1 DMT family transporter -
  IC776_RS01650 (IC776_01650) coaE 348608..349204 (-) 597 WP_191012501.1 dephospho-CoA kinase -
  IC776_RS19405 (IC776_01655) pilD 349206..350066 (-) 861 WP_191012502.1 prepilin peptidase Machinery gene
  IC776_RS01660 (IC776_01660) pilC 350066..351292 (-) 1227 WP_134262170.1 type II secretion system F family protein Machinery gene
  IC776_RS01665 (IC776_01665) pilB 351320..353032 (-) 1713 WP_191012503.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC776_RS01670 (IC776_01670) tpiA 353322..354116 (+) 795 WP_191012504.1 triose-phosphate isomerase -
  IC776_RS01675 (IC776_01675) secG 354129..354458 (+) 330 WP_002156913.1 preprotein translocase subunit SecG -
  IC776_RS01695 (IC776_01695) rimP 355096..355620 (+) 525 WP_002157009.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44941.40 Da        Isoelectric Point: 9.8883

>NTDB_id=483801 IC776_RS01660 WP_134262170.1 350066..351292(-) (pilC) [Acinetobacter seifertii strain AS39]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIVAIGTVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483801 IC776_RS01660 WP_134262170.1 350066..351292(-) (pilC) [Acinetobacter seifertii strain AS39]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGGGA
ACTTCCAGCCAAAAATATGGCTTTAGCTAAAGTGACCTTACGCAAACAAGGAGTTACTGTTCGAACCATACGCGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACGATTTTTACCCGACAACTGGCAACC
ATGATGAAAGCTGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAATCCCGCTATGCGTGAGGT
GGTACTGGGTATTAAAAGTGAAGTTGAAGGCGGGAGTACTTTTGCCTCAGCTTTAAAAAAGTATCCTCAGCATTTTGACA
ATTTATTTTGTTCTCTAGTGGAGTCTGGTGAACAATCAGGTGCACTTGAAACTATGCTAGATCGTGTGGCGATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCAATGAAATATCCAGCCACGGTTATTGTAGTAGCAATTGTGGT
GACCATTATTTTGATGGTTAAAGTCGTACCCGTGTTTCAGGATCTATTTGCTTCATTTGGAGCAGATTTACCTGCTTTCA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAGTACTGGTTCATTATGATTGTTGCAATTGGTACTGTGATTGCT
GCCTTCCTTGAGGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTGGATAAGCTGGCACTTAAATTACCTATTTTTGG
AGACTTAGTTTATAAAGCAATTATTGCTCGGTATAGCCGTACTTTAGCCACTACGTTTGCCGCAGGTGTTCCACTGATTG
ATGCGCTAGAATCAACCGCCGGTGCAACCAACAATGTTATTTATGAGCAAGCTGTCATGAAAATTCGTGAAGATGTCGCA
ACAGGTCAGCAACTTCAGTTTGCCATGCGTGTATCAAACCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACCTATTATGAAAATGAAGTTGATAATGCGGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTGGTAGGCGGTCTGGTGATTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E9PSA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.366

97.794

0.453
  pilC Vibrio cholerae strain A1552

41.912

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404