Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J7W01_RS06685 Genome accession   NZ_CP072525
Coordinates   1295346..1296482 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290346..1301482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS06665 (J7W01_06665) uxaA 1290799..1292292 (+) 1494 WP_015715723.1 altronate dehydratase family protein -
  J7W01_RS06670 (J7W01_06670) yjnA 1292331..1293095 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  J7W01_RS06675 (J7W01_06675) bstD 1293317..1293781 (-) 465 WP_015715724.1 DinB family protein -
  J7W01_RS06680 (J7W01_06680) yjoB 1293930..1295201 (+) 1272 WP_015715725.1 ATPase YjoB -
  J7W01_RS06685 (J7W01_06685) rapC 1295346..1296482 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  J7W01_RS06690 (J7W01_06690) phrA 1296472..1296606 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  J7W01_RS06695 (J7W01_06695) yjpA 1296637..1296894 (-) 258 WP_003232731.1 YciI family protein -
  J7W01_RS06700 (J7W01_06700) xlyB 1297015..1297968 (+) 954 WP_041850941.1 N-acetylmuramoyl-L-alanine amidase -
  J7W01_RS06705 (J7W01_06705) yjqA 1298008..1298385 (-) 378 WP_041850940.1 PH domain-containing protein -
  J7W01_RS06710 (J7W01_06710) pghB 1298490..1299092 (+) 603 WP_038828723.1 poly-gamma-glutamate hydrolase family protein -
  J7W01_RS06715 (J7W01_06715) xpdC 1299169..1300005 (+) 837 WP_003245071.1 manganese catalase family protein -
  J7W01_RS06720 (J7W01_06720) xkdA 1300049..1300645 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  J7W01_RS06725 (J7W01_06725) xre 1300808..1301149 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=483802 J7W01_RS06685 WP_015252291.1 1295346..1296482(+) (rapC) [Bacillus subtilis strain YB-04]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=483802 J7W01_RS06685 WP_015252291.1 1295346..1296482(+) (rapC) [Bacillus subtilis strain YB-04]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418