NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	IC776_RS19405	Genome accession	NZ_CP061646
Coordinates	349206..350066 (-)	Length	286 a.a.
NCBI ID	WP_191012502.1	Uniprot ID	A0A7H2V8F5
Organism	Acinetobacter seifertii strain AS39
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 344206..355066

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC776_RS01630 (IC776_01630)	-	345969..346406 (+)	438	Protein_309	tetratricopeptide repeat protein	-
IC776_RS01635 (IC776_01635)	-	346483..346809 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC776_RS01640 (IC776_01640)	rlmB	346912..347661 (+)	750	WP_039251214.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC776_RS01645 (IC776_01645)	-	347697..348611 (+)	915	WP_049064242.1	DMT family transporter	-
IC776_RS01650 (IC776_01650)	coaE	348608..349204 (-)	597	WP_191012501.1	dephospho-CoA kinase	-
IC776_RS19405 (IC776_01655)	pilD	349206..350066 (-)	861	WP_191012502.1	prepilin peptidase	Machinery gene
IC776_RS01660 (IC776_01660)	pilC	350066..351292 (-)	1227	WP_134262170.1	type II secretion system F family protein	Machinery gene
IC776_RS01665 (IC776_01665)	pilB	351320..353032 (-)	1713	WP_191012503.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IC776_RS01670 (IC776_01670)	tpiA	353322..354116 (+)	795	WP_191012504.1	triose-phosphate isomerase	-
IC776_RS01675 (IC776_01675)	secG	354129..354458 (+)	330	WP_002156913.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32208.63 Da Isoelectric Point: 7.1038

                                >NTDB_id=483837 IC776_RS19405 WP_191012502.1 349206..350066(-) (pilD) [Acinetobacter seifertii strain AS39]

MQDIIAYFIQNLTALYVAVTLVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPNCHQP

IRWYQNIPIVSWLMLRGKCGYCQHPISIRYPAIELLTMLCSVVVVMVFGPTIQMLWGLILTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPSSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=483837 IC776_RS19405 WP_191012502.1 349206..350066(-) (pilD) [Acinetobacter seifertii strain AS39]

ATGCAAGATATTATTGCTTATTTTATTCAAAACCTAACTGCACTTTATGTTGCAGTTACACTCGTGAGCCTATGTATTGG

TAGCTTTCTGAATGTAGTGATTTATCGGACTCCCAAAATGATGGAGCAAGACTGGCAGCAAGAATGTCAAATGCTCTTAA

ATCCAGAGCAACCCATTATTGACCATGAAAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAATTGCCACCAACCG

ATCCGTTGGTATCAAAATATTCCTATCGTAAGCTGGTTGATGCTAAGAGGAAAATGTGGTTATTGCCAACATCCTATCAG

CATTCGTTATCCAGCAATTGAACTACTCACCATGCTATGCTCTGTGGTAGTGGTTATGGTATTTGGCCCAACTATACAAA

TGCTTTGGGGACTCATTCTTACTTGGGTACTGATTGCCCTTACCTTTATTGATTTCGATACGCAGTTATTACCTGATCGC

TTTACCCTGCCTTTGGCTGCACTCGGCTTAGGAATTAACACCTTTAATATTTACACCTCACCTAGCTCAGCCATTTGGGG

ATATTTAATTGGTTTTTTATGTCTCTGGATTGTCTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG

GTGACTTTAAATTGCTTGCCGCATTGGGCGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA

TTGGGTGCAATTATTGGCATCATTTTATTAAAGTTAAGAAATGAAAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7H2V8F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Acinetobacter baumannii D1279779	94.755	100	0.948
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448

Detailed information NTG0483837