Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC781_RS01730 Genome accession   NZ_CP061626
Coordinates   371773..372999 (-) Length   408 a.a.
NCBI ID   WP_191010749.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366773..377999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS19275 - 367678..368084 (+) 407 Protein_326 tetratricopeptide repeat protein -
  IC781_RS01705 (IC781_01705) - 368191..368517 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IC781_RS01710 (IC781_01710) rlmB 368620..369369 (+) 750 WP_019456777.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC781_RS01715 (IC781_01715) - 369404..370318 (+) 915 WP_191010746.1 DMT family transporter -
  IC781_RS01720 (IC781_01720) coaE 370315..370911 (-) 597 WP_191010747.1 dephospho-CoA kinase -
  IC781_RS19235 (IC781_01725) pilD 370913..371773 (-) 861 WP_191010748.1 prepilin peptidase Machinery gene
  IC781_RS01730 (IC781_01730) pilC 371773..372999 (-) 1227 WP_191010749.1 type II secretion system F family protein Machinery gene
  IC781_RS01735 (IC781_01735) pilB 373027..374739 (-) 1713 WP_191010750.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC781_RS01740 (IC781_01740) tpiA 375029..375823 (+) 795 WP_191010751.1 triose-phosphate isomerase -
  IC781_RS01745 (IC781_01745) secG 375836..376165 (+) 330 WP_019456770.1 preprotein translocase subunit SecG -
  IC781_RS01765 (IC781_01765) rimP 376803..377327 (+) 525 WP_002157009.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45085.75 Da        Isoelectric Point: 10.0520

>NTDB_id=483634 IC781_RS01730 WP_191010749.1 371773..372999(-) (pilC) [Acinetobacter seifertii strain AS48]
MAVKKAQMMPTFTYEGVDRKGIKIKGELPAKNMALAKVILRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLIESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMIKVVPVFQYLFSSFGAKLPAFTQMVVDMSKWMQSYWFIMIIAIGGIIV
AFLEAKKRSKKFRDGLDKLILKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483634 IC781_RS01730 WP_191010749.1 371773..372999(-) (pilC) [Acinetobacter seifertii strain AS48]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTACTTATGAAGGGGTTGACCGTAAAGGCATAAAAATTAAGGGAGA
ACTGCCAGCTAAAAATATGGCTTTAGCTAAAGTGATCTTACGCAAACAAGGGGTCACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACTCTCGATATTACGATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCTGAAGGCTTAGAAAATCCAGCAATGCGGGAGGT
GGTACTTGGTATTAAAGGTGAGGTTGAAGGTGGCAGCACTTTTGCCTCAGCTTTAAGAAAGTATCCTCAACATTTTGACA
ACTTGTTTTGTTCACTTATTGAATCTGGTGAGCAGTCAGGTGCCCTTGAAACCATGCTTGACCGTGTAGCAATTTACAAA
GAAAAAAGTGAATTGTTAAAGCAGAAAATCAAGAAAGCAATGAAATACCCCGCAACGGTTATTGTCGTAGCAATTGTAGT
GACTATTATTTTGATGATTAAAGTCGTACCCGTGTTTCAGTATCTGTTTTCTTCATTCGGAGCAAAGTTACCAGCCTTTA
CGCAAATGGTTGTAGACATGTCAAAATGGATGCAATCATACTGGTTCATCATGATTATTGCGATTGGTGGCATTATTGTC
GCCTTTCTGGAGGCAAAAAAACGTAGTAAAAAGTTTCGGGATGGTTTAGATAAGTTGATACTTAAATTACCTATTTTCGG
AGACTTAGTTTATAAGGCAATTATTGCCCGTTATAGCCGGACCCTTGCCACAACATTTGCAGCAGGTGTTCCGCTCATTG
ATGCACTAGAATCGACTGCAGGCGCAACAAATAATGTTATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCA
ACTGGTCAACAGCTTCAGTTTGCTATGCGAGTATCTAATCGTTTTCCATCGATGGCTATACAAATGGTTGCAATTGGGGA
AGAATCTGGTGCACTAGACAGCATGCTTGATAAAGTTGCTACCTATTATGAAAATGAAGTGGATAATGCGGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCTGTTTTAGGCGTACTGGTAGGCGGTCTAGTAGTTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

95.343

100

0.953
  pilC Acinetobacter baylyi ADP1

84.559

100

0.846
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.619

97.794

0.466
  pilG Neisseria meningitidis 44/76-A

47.619

97.794

0.466
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.199

98.775

0.397