Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC798_RS16830 Genome accession   NZ_CP061551
Coordinates   3564680..3565906 (+) Length   408 a.a.
NCBI ID   WP_191107092.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3559680..3570906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC798_RS16795 (IC798_16795) rimP 3560352..3560876 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  IC798_RS16815 (IC798_16815) secG 3561514..3561843 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  IC798_RS16820 (IC798_16820) tpiA 3561856..3562650 (-) 795 WP_191107091.1 triose-phosphate isomerase -
  IC798_RS16825 (IC798_16825) pilB 3562941..3564652 (+) 1712 Protein_3318 type IV-A pilus assembly ATPase PilB -
  IC798_RS16830 (IC798_16830) pilC 3564680..3565906 (+) 1227 WP_191107092.1 type II secretion system F family protein Machinery gene
  IC798_RS16835 (IC798_16835) pilD 3565906..3566766 (+) 861 WP_191107093.1 A24 family peptidase Machinery gene
  IC798_RS16840 (IC798_16840) coaE 3566768..3567364 (+) 597 WP_039251211.1 dephospho-CoA kinase -
  IC798_RS16845 (IC798_16845) - 3567367..3568275 (-) 909 WP_191107094.1 DMT family transporter -
  IC798_RS16850 (IC798_16850) rlmB 3568307..3569059 (-) 753 WP_191000795.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC798_RS16855 (IC798_16855) - 3569162..3569488 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IC798_RS16860 (IC798_16860) - 3569565..3570000 (-) 436 Protein_3325 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44969.47 Da        Isoelectric Point: 9.8960

>NTDB_id=483137 IC798_RS16830 WP_191107092.1 3564680..3565906(+) (pilC) [Acinetobacter seifertii strain AS78]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLIESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGAMIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAVQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483137 IC798_RS16830 WP_191107092.1 3564680..3565906(+) (pilC) [Acinetobacter seifertii strain AS78]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGGGA
ACTTCCAGCCAAAAATATGGCTTTAGCTAAAGTGACCTTACGCAAACAAGGAGTTACTGTTCGAACAATACGTGAGAAAC
GTAAAAATATCCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACGATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCGCTGGTACAAGGCTTTGAAATAGTAGCAGAAGGTTTAGAAAATCCAGCCATGCGTGAGGT
AGTACTCGGTATTAAAGGTGAAGTGGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAGAAAGTATCCTCAACATTTTGACA
ACTTGTTTTGTTCACTTATTGAATCTGGTGAGCAGTCAGGTGCCCTTGAAACTATGCTTGACCGTGTAGCAATTTACAAA
GAAAAAAGTGAATTGTTAAAACAGAAAATCAAGAAAGCAATGAAATATCCTGCAACGGTTATTGTGGTAGCGATTGTGGT
GACCATTATTTTGATGGTTAAAGTCGTACCCGTGTTTCAGGATCTGTTTTCTTCATTCGGAGCAGAATTACCAGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAAGAATACTGGTTTATTATGATTATCGCGATTGGTGCAATGATTGCC
GCCTTTTTAGAAGCTAAAAAACGCAGTAAGAAGTTTCGTGACGGTTTAGATAAACTAGCGCTTAAATTACCTATTTTTGG
GGATTTGGTCTATAAAGCAATTATTGCACGTTATAGCCGGACGCTTGCGACCACATTCGCAGCTGGTGTTCCACTCATTG
ATGCACTTGAGTCAACCGCCGGCGCAACCAACAATGTCATCTATGAGCAAGCTGTCATGAAAATTCGTGAAGATGTCGCA
ACAGGTCAACAACTTCAGTTTGCCATGCGTGTATCTAACCGTTTTCCTTCTATGGCTGTACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACCTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTGCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTGGTAGGCGGTCTGGTGATTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.304

100

0.973
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

51.852

99.265

0.515
  pilG Neisseria meningitidis 44/76-A

46.867

97.794

0.458
  pilG Neisseria gonorrhoeae MS11

46.867

97.794

0.458
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363