Detailed information NTG0483138

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IC798_RS16835
• Genome accession: NZ_CP061551
• Coordinates: 3565906..3566766 (+)
• Length: 286 a.a.
• NCBI ID: WP_191107093.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain AS78
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3560906..3571766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC798_RS16815 (IC798_16815)	secG	3561514..3561843 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
IC798_RS16820 (IC798_16820)	tpiA	3561856..3562650 (-)	795	WP_191107091.1	triose-phosphate isomerase	-
IC798_RS16825 (IC798_16825)	pilB	3562941..3564652 (+)	1712	Protein_3318	type IV-A pilus assembly ATPase PilB	-
IC798_RS16830 (IC798_16830)	pilC	3564680..3565906 (+)	1227	WP_191107092.1	type II secretion system F family protein	Machinery gene
IC798_RS16835 (IC798_16835)	pilD	3565906..3566766 (+)	861	WP_191107093.1	A24 family peptidase	Machinery gene
IC798_RS16840 (IC798_16840)	coaE	3566768..3567364 (+)	597	WP_039251211.1	dephospho-CoA kinase	-
IC798_RS16845 (IC798_16845)	-	3567367..3568275 (-)	909	WP_191107094.1	DMT family transporter	-
IC798_RS16850 (IC798_16850)	rlmB	3568307..3569059 (-)	753	WP_191000795.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC798_RS16855 (IC798_16855)	-	3569162..3569488 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC798_RS16860 (IC798_16860)	-	3569565..3570000 (-)	436	Protein_3325	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32086.54 Da
• Isoelectric Point: 7.8340

>NTDB_id=483138 IC798_RS16835 WP_191107093.1 3565906..3566766(+) (pilD) [Acinetobacter seifertii strain AS78]
MQEIIAYFIQNLTVLYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHGKLTLSKPASSCPKCHQS
IRWYQNIPVISWLVLRGKCGHCQHSISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=483138 IC798_RS16835 WP_191107093.1 3565906..3566766(+) (pilD) [Acinetobacter seifertii strain AS78]
ATGCAAGAAATCATTGCTTATTTTATTCAAAATTTAACTGTACTTTATATTGCAGTTGCACTCGTGAGCCTATGTATTGG
TAGCTTTCTAAATGTAGTGATTTATCGCACTCCTAAAATGATGGAGCAAGACTGGCAACAAGAATGTCAAATGCTCCTAA
ATCCAGAGCAACCCATTATTGACCATGGGAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAAGTGCCATCAATCG
ATTCGTTGGTATCAAAATATTCCTGTCATAAGCTGGCTTGTGCTAAGAGGAAAATGTGGTCATTGCCAGCATTCGATTAG
CATTCGTTATCCAGCAATTGAACTACTCACCATGTTATGTTCATTGGTGGTGGTTATGGTGTTTGGCCCGACCATACAAA
TGCTTTTCGGCCTAGTCCTCACATGGATACTAATTGCCCTCACCTTTATAGACTTTGATACTCAGCTGCTACCCGACCGT
TTTACCCTACCTTTGGCTGCGCTTGGCTTAGGCATTAATACCTTTAATATTTATACCTCACCTAACTCGGCCATTTGGGG
TTACCTGATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG
GTGACTTTAAGTTACTTGCAGCATTGGGCGCATGGATGGGGCCATTGATGCTACCGTTAATTGTGTTATTGTCGTCTTTA
TTGGGTGCAATCATTGGCATCATCTTATTAAAGTTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	96.853	100	0.969
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Vibrio cholerae strain A1552	52.574	95.105	0.5
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437