Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC799_RS16410 Genome accession   NZ_CP061550
Coordinates   3552465..3553691 (+) Length   408 a.a.
NCBI ID   WP_134262170.1    Uniprot ID   A0A5E9PSA4
Organism   Acinetobacter seifertii strain AS79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3547465..3558691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS16375 (IC799_16370) rimP 3548137..3548661 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  IC799_RS16395 (IC799_16390) secG 3549299..3549628 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  IC799_RS16400 (IC799_16395) tpiA 3549641..3550435 (-) 795 WP_191012504.1 triose-phosphate isomerase -
  IC799_RS16405 (IC799_16400) pilB 3550725..3552437 (+) 1713 WP_151740588.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC799_RS16410 (IC799_16405) pilC 3552465..3553691 (+) 1227 WP_134262170.1 type II secretion system F family protein Machinery gene
  IC799_RS18285 (IC799_16410) pilD 3553691..3554551 (+) 861 WP_191028695.1 prepilin peptidase Machinery gene
  IC799_RS16420 (IC799_16415) coaE 3554553..3555149 (+) 597 WP_191012501.1 dephospho-CoA kinase -
  IC799_RS16425 (IC799_16420) - 3555146..3556060 (-) 915 WP_049064242.1 DMT family transporter -
  IC799_RS16430 (IC799_16425) rlmB 3556096..3556845 (-) 750 WP_039251214.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC799_RS16435 (IC799_16430) - 3556948..3557274 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IC799_RS16440 (IC799_16435) - 3557351..3557788 (-) 438 Protein_3225 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44941.40 Da        Isoelectric Point: 9.8883

>NTDB_id=483100 IC799_RS16410 WP_134262170.1 3552465..3553691(+) (pilC) [Acinetobacter seifertii strain AS79]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIVAIGTVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483100 IC799_RS16410 WP_134262170.1 3552465..3553691(+) (pilC) [Acinetobacter seifertii strain AS79]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGGGA
ACTTCCAGCCAAAAATATGGCTTTAGCTAAAGTGACCTTACGCAAACAAGGAGTTACTGTTCGAACCATACGCGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACGATTTTTACCCGACAACTGGCAACC
ATGATGAAAGCTGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAATCCCGCTATGCGTGAGGT
GGTACTGGGTATTAAAAGTGAAGTTGAAGGCGGGAGTACTTTTGCCTCAGCTTTAAAAAAGTATCCTCAGCATTTTGACA
ATTTATTTTGTTCTCTAGTGGAGTCTGGTGAACAATCAGGTGCACTTGAAACTATGCTAGATCGTGTGGCGATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCAATGAAATATCCAGCCACGGTTATTGTAGTAGCAATTGTGGT
GACCATTATTTTGATGGTTAAAGTCGTACCCGTGTTTCAGGATCTATTTGCTTCATTTGGAGCAGATTTACCTGCTTTCA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAGTACTGGTTCATTATGATTGTTGCAATTGGTACTGTGATTGCT
GCCTTCCTTGAGGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTGGATAAGCTGGCACTTAAATTACCTATTTTTGG
AGACTTAGTTTATAAAGCAATTATTGCTCGGTATAGCCGTACTTTAGCCACTACGTTTGCCGCAGGTGTTCCACTGATTG
ATGCGCTAGAATCAACCGCCGGTGCAACCAACAATGTTATTTATGAGCAAGCTGTCATGAAAATTCGTGAAGATGTCGCA
ACAGGTCAGCAACTTCAGTTTGCCATGCGTGTATCAAACCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACCTATTATGAAAATGAAGTTGATAATGCGGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTGGTAGGCGGTCTGGTGATTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E9PSA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.366

97.794

0.453
  pilC Vibrio cholerae strain A1552

41.912

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404