Detailed information NTG0483110

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IC799_RS18285
• Genome accession: NZ_CP061550
• Coordinates: 3553691..3554551 (+)
• Length: 286 a.a.
• NCBI ID: WP_191028695.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain AS79
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3548691..3559551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC799_RS16395 (IC799_16390)	secG	3549299..3549628 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
IC799_RS16400 (IC799_16395)	tpiA	3549641..3550435 (-)	795	WP_191012504.1	triose-phosphate isomerase	-
IC799_RS16405 (IC799_16400)	pilB	3550725..3552437 (+)	1713	WP_151740588.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IC799_RS16410 (IC799_16405)	pilC	3552465..3553691 (+)	1227	WP_134262170.1	type II secretion system F family protein	Machinery gene
IC799_RS18285 (IC799_16410)	pilD	3553691..3554551 (+)	861	WP_191028695.1	prepilin peptidase	Machinery gene
IC799_RS16420 (IC799_16415)	coaE	3554553..3555149 (+)	597	WP_191012501.1	dephospho-CoA kinase	-
IC799_RS16425 (IC799_16420)	-	3555146..3556060 (-)	915	WP_049064242.1	DMT family transporter	-
IC799_RS16430 (IC799_16425)	rlmB	3556096..3556845 (-)	750	WP_039251214.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC799_RS16435 (IC799_16430)	-	3556948..3557274 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC799_RS16440 (IC799_16435)	-	3557351..3557788 (-)	438	Protein_3225	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32178.61 Da
• Isoelectric Point: 7.1038

>NTDB_id=483110 IC799_RS18285 WP_191028695.1 3553691..3554551(+) (pilD) [Acinetobacter seifertii strain AS79]
MQDIIAYFIQNLTALYVAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPNCHQP
IRWYQNIPIVSWLMLRGKCGYCQHPISIRYPAIELLTMLCSVVVVMVFGPTIQMLWGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPSSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=483110 IC799_RS18285 WP_191028695.1 3553691..3554551(+) (pilD) [Acinetobacter seifertii strain AS79]
ATGCAAGATATTATTGCTTATTTTATTCAAAACCTAACTGCACTTTATGTTGCAGTTGCACTCGTGAGCCTATGTATTGG
TAGCTTTCTGAATGTAGTGATTTATCGGACTCCAAAAATGATGGAGCAAGACTGGCAGCAAGAATGTCAAATGCTCCTAA
ATCCAGAGCAACCCATTATTGACCATGAAAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAATTGCCACCAACCG
ATCCGTTGGTATCAAAATATTCCTATCGTAAGCTGGTTGATGCTAAGAGGAAAATGTGGTTATTGCCAACATCCTATCAG
CATTCGTTATCCAGCAATTGAACTACTCACCATGCTATGCTCTGTGGTAGTGGTTATGGTATTTGGCCCAACTATACAAA
TGCTTTGGGGACTCATTCTTACTTGGGTACTGATTGCCCTTACCTTTATTGATTTCGATACGCAGTTATTACCTGATCGC
TTTACCCTGCCTTTGGCTGCACTCGGCTTAGGAATTAACACCTTTAATATTTACACCTCACCTAGCTCAGCCATTTGGGG
ATATTTAATTGGTTTTTTATGTCTCTGGATTGTCTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG
GTGACTTTAAATTGCTTGCCGCATTGGGCGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
TTGGGTGCAATTATTGGCATCATTTTATTAAAGTTAAGAAATGAAAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Acinetobacter baumannii D1279779	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	48.864	92.308	0.451