Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSTAA_RS05160 Genome accession   NC_017532
Coordinates   1105608..1106825 (+) Length   405 a.a.
NCBI ID   WP_014595958.1    Uniprot ID   A0AA42KY87
Organism   Stutzerimonas stutzeri DSM 4166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1100608..1111825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSTAA_RS21910 (PSTAA_1015) - 1102098..1102652 (-) 555 WP_080558856.1 REP-associated tyrosine transposase -
  PSTAA_RS21915 - 1103108..1103592 (-) 485 Protein_1030 pilin -
  PSTAA_RS05155 (PSTAA_1016) pilB 1103902..1105605 (+) 1704 WP_014595957.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSTAA_RS05160 (PSTAA_1017) pilC 1105608..1106825 (+) 1218 WP_014595958.1 type II secretion system F family protein Machinery gene
  PSTAA_RS05165 (PSTAA_1018) pilD 1106828..1107697 (+) 870 WP_014595959.1 prepilin peptidase Machinery gene
  PSTAA_RS05170 (PSTAA_1019) coaE 1107829..1108437 (+) 609 WP_014595960.1 dephospho-CoA kinase -
  PSTAA_RS05175 yacG 1108434..1108631 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  PSTAA_RS05180 (PSTAA_1020) - 1108644..1109324 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  PSTAA_RS05185 (PSTAA_1021) - 1109382..1110422 (-) 1041 WP_014595961.1 NADP(H)-dependent aldo-keto reductase -
  PSTAA_RS05190 (PSTAA_1022) rplM 1110837..1111265 (+) 429 WP_014595962.1 50S ribosomal protein L13 -
  PSTAA_RS05195 (PSTAA_1023) rpsI 1111281..1111673 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44124.90 Da        Isoelectric Point: 9.9609

>NTDB_id=48284 PSTAA_RS05160 WP_014595958.1 1105608..1106825(+) (pilC) [Stutzerimonas stutzeri DSM 4166]
MAQKAIRTSVFSWEGTDRKGSKVKGELSGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVLMVAIIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIVLAGLIVGAFAFK
GAHKRSEKFRNWFDRLLLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATMKVKNDVSTGM
QLNFSMRTTGTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=48284 PSTAA_RS05160 WP_014595958.1 1105608..1106825(+) (pilC) [Stutzerimonas stutzeri DSM 4166]
ATGGCGCAGAAAGCGATCAGAACCAGTGTGTTCAGCTGGGAGGGAACCGACCGCAAGGGCAGCAAGGTCAAGGGTGAGCT
TAGTGGCGCGAGCCCGGCGCTGGTGAAGGCGCAATTGCGCAAGCAAGGGATCAATCCACAGAAAGTGCGCAAGAAGTCCG
TATCTTTGTTTGGAGCGGGCAAGAAAATTAAACCCATGGATATCGCGCTGTTCACCCGACAGATGGCGACGATGATGAAA
GCCGGCGTGCCGCTGCTGCAGTCTTTCGATATCATCGGTGAGGGTTTCGACAATCCGAACATGCGCAAGCTGGTGGATGA
CCTGAAGCAGGAAGTTGCGGCAGGTAACAGTTTCGCGACGGCTTTGCGCAAAAAGCCACAATACTTCGATGACCTGTATT
GCAACCTGGTCGATTCCGGTGAGCAATCCGGTGCTTTGGAGACCTTGCTCGATCGTGTGGCGACCTACAAGGAAAAGACC
GAGGCATTGAAGGCCAAGATCAAAAAAGCGATGAACTATCCCATTGCGGTACTTATGGTGGCGATCATAGTATCGGCTAT
CCTTTTGATCAAAGTGGTGCCGCAGTTCCAAGAGGTGTTCGCCAATTTCGGAGCTGAGCTTCCGGCTTTTACCTTGATGG
TAATTGGGTTGTCGGAAGCGCTGCAGGAGTGGTGGTTCATTGTTTTGGCAGGGTTAATTGTAGGCGCTTTTGCTTTTAAG
GGGGCACACAAGCGCTCCGAGAAATTTCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTGCCAGTTGTTGGTGACATTCT
TTACAAGTCTTCCGTCGCCCGCTTTGCCCGGACTCTGTCAACGACTTTTGCTGCGGGTGTGCCGCTGGTGGATGCGCTGG
ACTCGGTGGCTGGAGCCACGGGCAATGTGGTCTTTCGAAGCGCAACGATGAAGGTCAAGAATGATGTATCCACTGGCATG
CAGCTTAACTTCTCCATGCGCACCACAGGCACGTTCCCTACGATGGCAGTGCAGATGACAGCAATCGGTGAAGAGTCTGG
TTCGCTTGATGAGATGCTGGCTAAGGTTGCGACTTTCTACGAGGACGAAGTCGATAACATGGTAGATAGCCTGACTAGCC
TGATGGAACCAATGATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATCATCGCTATGTACCTTCCGATTTTCCAG
CTAGGTGCTGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.123

100

0.901
  pilC Acinetobacter baylyi ADP1

60.539

100

0.61
  pilC Acinetobacter baumannii D1279779

60

100

0.6
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

45.202

97.778

0.442
  pilG Neisseria meningitidis 44/76-A

45.202

97.778

0.442
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilC Vibrio campbellii strain DS40M4

40.404

97.778

0.395

Multiple sequence alignment