Detailed information NTG0048285

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSTAA_RS05165
• Genome accession: NC_017532
• Coordinates: 1106828..1107697 (+)
• Length: 289 a.a.
• NCBI ID: WP_014595959.1
• Uniprot ID: A0AA42KPY8
• Organism: Stutzerimonas stutzeri DSM 4166
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1101828..1112697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSTAA_RS21910 (PSTAA_1015)	-	1102098..1102652 (-)	555	WP_080558856.1	REP-associated tyrosine transposase	-
PSTAA_RS21915	-	1103108..1103592 (-)	485	Protein_1030	pilin	-
PSTAA_RS05155 (PSTAA_1016)	pilB	1103902..1105605 (+)	1704	WP_014595957.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSTAA_RS05160 (PSTAA_1017)	pilC	1105608..1106825 (+)	1218	WP_014595958.1	type II secretion system F family protein	Machinery gene
PSTAA_RS05165 (PSTAA_1018)	pilD	1106828..1107697 (+)	870	WP_014595959.1	prepilin peptidase	Machinery gene
PSTAA_RS05170 (PSTAA_1019)	coaE	1107829..1108437 (+)	609	WP_014595960.1	dephospho-CoA kinase	-
PSTAA_RS05175	yacG	1108434..1108631 (+)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
PSTAA_RS05180 (PSTAA_1020)	-	1108644..1109324 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
PSTAA_RS05185 (PSTAA_1021)	-	1109382..1110422 (-)	1041	WP_014595961.1	NADP(H)-dependent aldo-keto reductase	-
PSTAA_RS05190 (PSTAA_1022)	rplM	1110837..1111265 (+)	429	WP_014595962.1	50S ribosomal protein L13	-
PSTAA_RS05195 (PSTAA_1023)	rpsI	1111281..1111673 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
PSTAA_RS05200	petA	1111928..1112521 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32071.95 Da
• Isoelectric Point: 7.0086

>NTDB_id=48285 PSTAA_RS05165 WP_014595959.1 1106828..1107697(+) (pilD) [Stutzerimonas stutzeri DSM 4166]
MSLIDFLASHVLAFVLSAAVLGLLVGSFLNVVIHRLPIMMQSEWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIR
AWENIPLVSWLALRGKCSSCQTPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLV
LPLLWVGLIANSFALFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 870 bp

>NTDB_id=48285 PSTAA_RS05165 WP_014595959.1 1106828..1107697(+) (pilD) [Stutzerimonas stutzeri DSM 4166]
ATGAGTTTGATTGACTTCTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAG
CTTTCTCAATGTCGTAATTCACCGTTTGCCAATAATGATGCAGAGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGT
ATCCGCCCGAGCCAATTGGGGAGCGTTTCAATCTATTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGT
GCCTGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGACGCCGATCAGCTGTCG
ATATCCGTTGGTTGAGCTGGCGTGTGGTGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGG
CGATGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTG
CTGCCGCTCTTGTGGGTAGGGTTGATTGCCAACAGCTTTGCTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGAT
AGCCGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGGATGGGCTACGGCGATT
TCAAGCTGCTGGCGATGCTTGGTGCCTGGGGTGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCGTCGGTGGTCGGC
GCCGTGCTTGGCAGTATTCTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGAT
AGCGGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.091	95.156	0.543
pilD	Vibrio campbellii strain DS40M4	57.299	94.81	0.543
pilD	Acinetobacter baumannii D1279779	50.175	98.616	0.495
pilD	Acinetobacter nosocomialis M2	50.175	98.616	0.495
pilD	Neisseria gonorrhoeae MS11	52.471	91.003	0.478