Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IAQ67_RS14530 Genome accession   NZ_CP061172
Coordinates   3251847..3252287 (-) Length   146 a.a.
NCBI ID   WP_190297042.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZF390     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3246847..3257287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ67_RS14515 (IAQ67_14515) - 3247937..3248992 (+) 1056 WP_190297039.1 hypothetical protein -
  IAQ67_RS14520 (IAQ67_14520) - 3249667..3250917 (-) 1251 WP_190297040.1 hypothetical protein -
  IAQ67_RS14525 (IAQ67_14525) - 3251019..3251696 (-) 678 WP_190297041.1 hypothetical protein -
  IAQ67_RS14530 (IAQ67_14530) ssbA 3251847..3252287 (-) 441 WP_190297042.1 single-stranded DNA-binding protein Machinery gene
  IAQ67_RS14535 (IAQ67_14535) - 3252395..3253720 (-) 1326 WP_190297043.1 DUF3854 domain-containing protein -
  IAQ67_RS14540 (IAQ67_14540) - 3254288..3255433 (-) 1146 WP_190297044.1 replication-relaxation family protein -
  IAQ67_RS14545 (IAQ67_14545) - 3255436..3256356 (-) 921 WP_190297045.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16576.44 Da        Isoelectric Point: 5.3108

>NTDB_id=481143 IAQ67_RS14530 WP_190297042.1 3251847..3252287(-) (ssbA) [Paenibacillus peoriae strain ZF390]
MLNRVILIGRLTKDPELRYTPNGTAVAQFTLAVDRPFANQGGEREADFIPIVTWRQLAESCANYLRKGRLTAIEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESSKREGRNETTSINSNSQAGRNHDPFYDDGKPIDISDDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=481143 IAQ67_RS14530 WP_190297042.1 3251847..3252287(-) (ssbA) [Paenibacillus peoriae strain ZF390]
ATGTTAAATCGTGTAATTTTAATAGGTAGACTTACAAAAGATCCAGAATTACGTTACACCCCAAATGGGACAGCAGTAGC
TCAGTTCACACTTGCAGTTGACCGTCCGTTTGCCAATCAGGGAGGCGAAAGAGAAGCTGATTTTATTCCGATTGTAACTT
GGAGGCAGCTAGCTGAGAGCTGTGCTAATTATCTTCGTAAAGGTCGACTGACTGCTATTGAAGGAAGAGTTCAAGTACGC
AACTATGAAAATAATGAAGGAAAACGTGTTTATGTGACTGAAATTGTTGCTGACAATGTTCGTTTTCTAGAATCCTCTAA
ACGGGAAGGAAGAAACGAAACCACATCAATTAATAGCAATTCTCAAGCAGGTCGAAACCACGATCCTTTTTACGATGATG
GTAAGCCAATAGACATCTCAGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.664
  ssb Latilactobacillus sakei subsp. sakei 23K

47.647

100

0.555
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.963

74.658

0.418
  ssbB/cilA Streptococcus mitis NCTC 12261

39.726

100

0.397
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.726

100

0.397
  ssbB/cilA Streptococcus pneumoniae Rx1

39.041

100

0.39
  ssbB/cilA Streptococcus pneumoniae D39

39.041

100

0.39
  ssbB/cilA Streptococcus pneumoniae R6

39.041

100

0.39
  ssbB/cilA Streptococcus mitis SK321

39.041

100

0.39
  ssbA Streptococcus mutans UA159

36.986

100

0.37