Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMBG2136_RS04510 Genome accession   NC_017513
Coordinates   847529..848125 (+) Length   198 a.a.
NCBI ID   WP_014580775.1    Uniprot ID   -
Organism   Neisseria meningitidis G2136     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 842529..853125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS04485 (NMBG2136_0823) - 842986..843573 (-) 588 WP_002220670.1 superoxide dismutase -
  NMBG2136_RS04490 (NMBG2136_0824) dnaB 843736..845142 (+) 1407 WP_002213843.1 replicative DNA helicase -
  NMBG2136_RS04495 (NMBG2136_0825) pilH 845297..845965 (+) 669 WP_041423517.1 GspH/FimT family pseudopilin Machinery gene
  NMBG2136_RS04500 (NMBG2136_0826) pilV 845995..846606 (+) 612 WP_014580773.1 type IV pilus modification protein PilV Machinery gene
  NMBG2136_RS04505 (NMBG2136_0827) pilJ 846603..847550 (+) 948 WP_041423518.1 PilW family protein Machinery gene
  NMBG2136_RS04510 (NMBG2136_0828) pilK 847529..848125 (+) 597 WP_014580775.1 pilus assembly PilX family protein Machinery gene
  NMBG2136_RS04515 (NMBG2136_0829) pilX 848130..848603 (+) 474 WP_014580776.1 PilX family type IV pilin Machinery gene
  NMBG2136_RS04525 (NMBG2136_0830) - 852011..852439 (-) 429 Protein_843 AzlC family ABC transporter permease -
  NMBG2136_RS04530 (NMBG2136_0831) dut 852582..853034 (+) 453 WP_002226436.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21784.70 Da        Isoelectric Point: 6.3842

>NTDB_id=47909 NMBG2136_RS04510 WP_014580775.1 847529..848125(+) (pilK) [Neisseria meningitidis G2136]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNTGNEEAFDNIVVQGNPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=47909 NMBG2136_RS04510 WP_014580775.1 847529..848125(+) (pilK) [Neisseria meningitidis G2136]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTA
CCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCACGCTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.884

Multiple sequence alignment