Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IAQ69_RS13765 Genome accession   NZ_CP060811
Coordinates   2867920..2869149 (+) Length   409 a.a.
NCBI ID   WP_180033708.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2862920..2874149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS13720 (IAQ69_13715) rimP 2863278..2863802 (-) 525 WP_179992192.1 ribosome maturation factor RimP -
  IAQ69_RS13750 (IAQ69_13745) secG 2864767..2865096 (-) 330 WP_159122712.1 preprotein translocase subunit SecG -
  IAQ69_RS13755 (IAQ69_13750) tpiA 2865110..2865901 (-) 792 WP_159122713.1 triose-phosphate isomerase -
  IAQ69_RS13760 (IAQ69_13755) pilB 2866180..2867889 (+) 1710 WP_159122714.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IAQ69_RS13765 (IAQ69_13760) pilC 2867920..2869149 (+) 1230 WP_180033708.1 type II secretion system F family protein Machinery gene
  IAQ69_RS13770 (IAQ69_13765) pilD 2869149..2870009 (+) 861 WP_200229182.1 prepilin peptidase Machinery gene
  IAQ69_RS13775 (IAQ69_13770) coaE 2870011..2870616 (+) 606 WP_200229184.1 dephospho-CoA kinase -
  IAQ69_RS13780 (IAQ69_13775) - 2870655..2871572 (-) 918 WP_159122718.1 DMT family transporter -
  IAQ69_RS13785 (IAQ69_13780) rlmB 2871616..2872365 (-) 750 WP_005233526.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IAQ69_RS13790 (IAQ69_13785) - 2872508..2872831 (-) 324 WP_004787221.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44872.26 Da        Isoelectric Point: 9.7991

>NTDB_id=478551 IAQ69_RS13765 WP_180033708.1 2867920..2869149(+) (pilC) [Acinetobacter variabilis strain XM9F202-2]
MAAVKKGQMTPIFSYEGVDRKGAKIKGELPARNMALAKVNLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVLRIKEDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=478551 IAQ69_RS13765 WP_180033708.1 2867920..2869149(+) (pilC) [Acinetobacter variabilis strain XM9F202-2]
ATGGCAGCAGTAAAAAAAGGCCAAATGACACCGATCTTCAGTTATGAAGGGGTTGATCGCAAAGGCGCCAAGATCAAGGG
GGAATTGCCGGCACGAAATATGGCCTTGGCAAAAGTGAACTTGCGCAAACAAGGCATCACGATCAAAACTATTCGAGAAA
AGAAAAAAAATATTCTCGAAGGTTTGATGAAGAAAAAAGTTTCCACGCTGGATATCACCATCTTCACCCGTCAGTTAGCG
ACCATGATGAAAGCCGGGGTACCTTTAGTACAAGGCTTTGAAATTGTCGCAGAAGGTTTGGAAAATCCATCTATGCGCGA
GGTTGTGCTTGGAATTAAAGGCGAAGTTGAAGGGGGGAATACTTTTGCCGGAGCATTACGAAAATACCCACAATATTTTG
ACAACCTATTCTGTTCTTTAGTTGAGTCTGGCGAACAATCTGGTGCTCTGGAAACCATGCTGGATCGTGTCGCGATTTAT
AAAGAAAAAAGTGAGCTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCTACAGTAATTGTAGTAGCTGTGAT
CGTCACAATTATCCTGATGGTGAAAGTAGTTCCTGTATTCCAAGACTTATTCTCTTCATTCGGTGCAGACTTACCTGCAT
TTACTAAAATGGTAGTCAATATGTCCGAATGGATGCAAAAATATTGGTTCCTTTTGATTATTGGAATTGGCGTAGTGATT
ACTGCTTTCCTTGAAGCGAAAAAGCGTAGCAAAAAATTCCGTGATTTACTGGATAAGGCCGCGCTCAAAGCACCCATCTT
TGGTGATCTGGTCTATAAAGCGATCATTGCCCGTTATAGCCGCACTCTCGCCACCACTTTTGCTGCCGGTGTGCCATTAA
TTGATGCGCTTGAATCGACTGCTGGTGCGACCAATAACGTAGTCTATGAAGAGGCAGTATTAAGAATCAAGGAAGATGTT
GCGACAGGTCAACAGCTTCAATTTGCCATGCGTGTCACCGATAAATTCCCCTCTATGGCCGTACAAATGGTTGCAATTGG
TGAAGAATCAGGTGCATTGGATGCCATGCTGGATAAAGTCGCAACCCATTATGAAAATGAAGTCGACAATGCGGTCGACG
GTTTAACCTCGATGATGGAACCCTTGATTATGGCAATTCTCGGTGTCCTTGTCGGTGGCCTGGTGGTGGCCATGTACCTT
CCAATCTTCCAAATGGGCTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.943

99.511

0.885
  pilC Acinetobacter baylyi ADP1

83.047

99.511

0.826
  pilC Pseudomonas stutzeri DSM 10701

62.06

97.311

0.604
  pilC Legionella pneumophila strain ERS1305867

53.401

97.066

0.518
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

42.647

99.756

0.425
  pilC Vibrio campbellii strain DS40M4

41.709

97.311

0.406